NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM753980 Query DataSets for GSM753980
Status Public on Dec 31, 2011
Title 72h K562_1 induced by hemin into erythroid differentiation
Sample type RNA
 
Source name K562 cells 72h induction
Organism Homo sapiens
Characteristics k562 cell: hemin 72h
Extracted molecule total RNA
Extraction protocol Trizol
Label Cy3
Label protocol Cy3
 
Hybridization protocol SAM
Scan protocol The BeadArray Reader
Data processing The raw intensity of Illumina MicroRNA expression array was scanned and extracted using BeadArray Reader(illumina,San Diego,CA), with the data corrected by background subtraction and normalized in GenomeStudio V2010.2 module(illumina,San Diego,CA). We normalized the intenstiydata with average normalization algorithm. Individual MicroRNAs were examined using the detection p-value metric provided by Illumina inwhich the signal generated from each MicroRNA is compared to negative controls. A threshold of p<0.05 was used as a cutoff.MicroRNA that did not reach this threshold were eliminated from the analysis.
 
Submission date Jul 03, 2011
Last update date Dec 31, 2011
Contact name Jia Yu
E-mail(s) j-yu@ibms.pumc.edu.cn
Organization name Peking Union Medical College
Department Biochemistry
Lab Yu
Street address Dong Dan San Tiao #5
City Bei Jing
ZIP/Postal code 100005
Country China
 
Platform ID GPL8179
Series (2)
GSE30380 Expression profile of hemin induced erythroid differentiation, over-expressing and knocking-down GATA-1, EKLF and NF-E2 in K562s
GSE30809 Systematical identification of GATA-1, EKLF, and NF-E2 regulated miRNAs by ChIP-on chip and microRNA microarray in K562 cells into erythroid differentiation

Data table header descriptions
ID_REF
VALUE miRNA expression value after normalized to background
K562_72h_1.Detection Pval

Data table
ID_REF VALUE K562_72h_1.Detection Pval
ILMN_3167304 0.958874 0.4378979
ILMN_3168038 0 0.5
ILMN_3167890 4877.792 3.68E-38
ILMN_3167526 -1.917748 0.6227083
ILMN_3167209 0.958874 0.4378979
ILMN_3168219 5.753244 0.1741722
ILMN_3167464 25.8896 1.22E-05
ILMN_3167213 -1.917748 0.6227083
ILMN_3167057 14.38311 0.009525946
ILMN_3168313 5.753244 0.1741722
ILMN_3166972 16.30086 0.00394067
ILMN_3168149 11.50649 0.03035432
ILMN_3168527 -2.876622 0.6804304
ILMN_3167562 17.25973 0.002450971
ILMN_3168099 48.90257 7.93E-16
ILMN_3168017 10.54761 0.04277896
ILMN_3167545 -0.958874 0.5621021
ILMN_3167951 7.670992 0.1055755
ILMN_3167172 4.79437 0.2172529
ILMN_3167994 0 0.5

Total number of rows: 1145

Table truncated, full table size 35 Kbytes.




Supplementary file Size Download File type/resource
GSM753980_K562_72h_1_raw.txt.gz 14.6 Kb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap