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Sample GSM753982 Query DataSets for GSM753982
Status Public on Dec 31, 2011
Title Overexpression of EKLF in K562 cells
Sample type RNA
 
Source name K562 cells overexpression of EKLF
Organism Homo sapiens
Characteristics k562 cell: overexpression of EKLF
Extracted molecule total RNA
Extraction protocol Trizol
Label Cy3
Label protocol Cy3
 
Hybridization protocol SAM
Scan protocol The BeadArray Reader
Data processing The raw intensity of Illumina MicroRNA expression array was scanned and extracted using BeadArray Reader(illumina,San Diego,CA), with the data corrected by background subtraction and normalized in GenomeStudio V2010.2 module(illumina,San Diego,CA). We normalized the intenstiydata with average normalization algorithm. Individual MicroRNAs were examined using the detection p-value metric provided by Illumina inwhich the signal generated from each MicroRNA is compared to negative controls. A threshold of p<0.05 was used as a cutoff.MicroRNA that did not reach this threshold were eliminated from the analysis.
 
Submission date Jul 03, 2011
Last update date Dec 31, 2011
Contact name Jia Yu
E-mail(s) j-yu@ibms.pumc.edu.cn
Organization name Peking Union Medical College
Department Biochemistry
Lab Yu
Street address Dong Dan San Tiao #5
City Bei Jing
ZIP/Postal code 100005
Country China
 
Platform ID GPL8179
Series (2)
GSE30380 Expression profile of hemin induced erythroid differentiation, over-expressing and knocking-down GATA-1, EKLF and NF-E2 in K562s
GSE30809 Systematical identification of GATA-1, EKLF, and NF-E2 regulated miRNAs by ChIP-on chip and microRNA microarray in K562 cells into erythroid differentiation

Data table header descriptions
ID_REF
VALUE miRNA expression value after normalized to background
K562_overGATA_1.Detection Pval

Data table
ID_REF VALUE K562_overGATA_1.Detection Pval
ILMN_3167304 1.725248 0.2717207
ILMN_3168038 -0.3450495 0.5483618
ILMN_3167890 -2.415347 0.8025219
ILMN_3167526 0.6900991 0.4039846
ILMN_3167209 0.6900991 0.4039846
ILMN_3168219 -0.3450495 0.5483618
ILMN_3167464 19.32277 5.07E-12
ILMN_3167213 -2.415347 0.8025219
ILMN_3167057 1.725248 0.2717207
ILMN_3168313 15.18218 4.48E-08
ILMN_3166972 2.760396 0.1654788
ILMN_3168149 339.1837 3.68E-38
ILMN_3168527 117.6619 3.68E-38
ILMN_3167562 -1.380198 0.6865495
ILMN_3168099 56.58812 3.68E-38
ILMN_3168017 4.830693 0.04444074
ILMN_3167545 -1.380198 0.6865495
ILMN_3167951 6.90099 0.007539676
ILMN_3167172 4.830693 0.04444074
ILMN_3167994 12.07673 1.05E-05

Total number of rows: 1145

Table truncated, full table size 36 Kbytes.




Supplementary file Size Download File type/resource
GSM753982_K562_OverEKLF_1_raw.txt.gz 13.5 Kb (ftp)(http) TXT
Processed data included within Sample table

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