|
| Status |
Public on Apr 03, 2024 |
| Title |
1277-CD-31 |
| Sample type |
SRA |
| |
|
| Source name |
Skin
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: Skin
cell type: Fibroblasts
patient: 27
treatment: TGF-B
disease state: Control
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was isolated using Qiagen RNeasy Plus kit
RNA sequencing was performed by the U-M Advanced Genomics Core on the Novaseq 6000 platform
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Data processing |
STAR alignment
HTSeq for gene quantification
Assembly: hg19
Supplementary files format and content: read count
|
| |
|
| Submission date |
Jul 18, 2023 |
| Last update date |
Apr 03, 2024 |
| Contact name |
Lam Tsoi |
| E-mail(s) |
alextsoi@umich.edu
|
| Organization name |
University of Michigan
|
| Street address |
Medical Sciences 1 Bldg. 1301 E. Catherine
|
| City |
Ann Arbor |
| State/province |
MI |
| ZIP/Postal code |
48109 |
| Country |
USA |
| |
|
| Platform ID |
GPL24676 |
| Series (1) |
| GSE237690 |
Lupus dermal fibroblasts hyper-respond to inflammatory cytokines and exhibit a pro-fibrotic phenotype to TGF-β in patients with scarring skin disease |
|
| Relations |
| BioSample |
SAMN36533268 |
| SRA |
SRX21166196 |
