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Sample GSM7667050 Query DataSets for GSM7667050
Status Public on May 15, 2024
Title mouse lung_elastase+LPS_TJ41 rep 1
Sample type SRA
 
Source name lung
Organism Mus musculus
Characteristics tissue: lung
genotype: wild type
treatment 1: elastase+LPS
treatment 2: TJ4
Extracted molecule total RNA
Extraction protocol Total RNA was extracted according to the instructions of the manufacturer of the RNeasy Mini Kit (Qiagen, Netherlands).
RNA libraries were prepared for sequencing using standard Illumina protocols
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
 
Data processing CLC Genomics Workbench v 21.0.5
RNA-sequencing (RNA-seq) reads were analyzed using CLC Genomics workbench software (Qiagen, Hilden, Germany) .
Read mapping was carried out using HISAT2 against mouse genome mm10.
Differential expression analysis was performed using edgeR Bioconductor package.
Assembly: mm10
Supplementary files format and content: a csv file include normalized values for each sample
 
Submission date Jul 28, 2023
Last update date May 15, 2024
Contact name Masaaki Yuki
E-mail(s) masaaki.yuki.702@gmail.com
Phone 09072744215
Organization name The University of Tokyo
Department Respiratory medicine
Street address 7-3-1 Hongo, Bunkyo-ku Tokyo
City Tokyo
ZIP/Postal code 113-8655
Country Japan
 
Platform ID GPL13112
Series (1)
GSE239537 A Japanese herbal medicine, Hochuekkito (TJ-41), has anti-inflammatory effects on the COPD mouse model
Relations
BioSample SAMN36749417
SRA SRX21185608

Supplementary file Size Download File type/resource
GSM7667050_022219_LIB19.csv.gz 233.1 Kb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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