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Sample GSM7675780 Query DataSets for GSM7675780
Status Public on Oct 02, 2023
Title Control 10
Sample type RNA
 
Source name human plasma
Organism Homo sapiens
Characteristics diagnosis: control
gender: Female
tissue: Plasma
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from 1 mL plasma using Trizol reagent following the manufacturer’s instructions
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
 
Hybridization protocol FlashTag Biotin HSR RNA labeling kit
Scan protocol Microarrays were scanned using the Affymetrix GeneChip Command Console.
Description Small RNA expression data in human plasma
PlasmaMiRNA MetSyndrome
Data processing Data were analyzed in the R/Bioconductor environment with the software Oligo, pd.mirna.3.0 and Linear Models for Microarray Analysis (LIMMA).
 
Submission date Aug 02, 2023
Last update date Oct 02, 2023
Contact name M Elizabeth Tejero
E-mail(s) etejero@inmegen.gob.mx
Phone +525513912583
Organization name Instituto Nacional de Medicina Genomica, Mexico City
Street address Periferico sur 4809
City Tlalpan
State/province Ciudad de México
ZIP/Postal code 14160
Country Mexico
 
Platform ID GPL16384
Series (1)
GSE239866 MicroRNAs in plasma in metabolic syndrome.

Data table header descriptions
ID_REF
VALUE Log2 RMA Signal

Data table
ID_REF VALUE
14q0_st 1.262639
14qI-1_st 1.5225
14qI-1_x_st 1.503354
14qI-2_st 1.12498
14qI-3_x_st 1.006409
14qI-4_st 1.072029
14qI-4_x_st 1.226336
14qI-5_st 1.168267
14qI-6_st 1.319682
14qI-6_x_st 1.44932
14qI-7_st 1.119365
14qI-8_st 1.562098
14qI-8_x_st 1.337974
14qI-9_x_st 1.030249
14qII-10_st 1.58088
14qII-10_x_st 1.124724
14qII-11_st 1.092366
14qII-11_x_st 1.348467
14qII-12_st 1.192983
14qII-12_x_st 1.574483

Total number of rows: 17870

Table truncated, full table size 451 Kbytes.




Supplementary file Size Download File type/resource
GSM7675780_10B.CEL.gz 707.0 Kb (ftp)(http) CEL
Processed data included within Sample table
Processed data are available on Series record

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