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Sample GSM7675792 Query DataSets for GSM7675792
Status Public on Oct 02, 2023
Title Control 7
Sample type RNA
 
Source name human plasma
Organism Homo sapiens
Characteristics diagnosis: control
gender: Female
tissue: Plasma
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from 1 mL plasma using Trizol reagent following the manufacturer’s instructions
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
 
Hybridization protocol FlashTag Biotin HSR RNA labeling kit
Scan protocol Microarrays were scanned using the Affymetrix GeneChip Command Console.
Description Small RNA expression data in human plasma
PlasmaMiRNA MetSyndrome
Data processing Data were analyzed in the R/Bioconductor environment with the software Oligo, pd.mirna.3.0 and Linear Models for Microarray Analysis (LIMMA).
 
Submission date Aug 02, 2023
Last update date Oct 02, 2023
Contact name M Elizabeth Tejero
E-mail(s) etejero@inmegen.gob.mx
Phone +525513912583
Organization name Instituto Nacional de Medicina Genomica, Mexico City
Street address Periferico sur 4809
City Tlalpan
State/province Ciudad de México
ZIP/Postal code 14160
Country Mexico
 
Platform ID GPL16384
Series (1)
GSE239866 MicroRNAs in plasma in metabolic syndrome.

Data table header descriptions
ID_REF
VALUE Log2 RMA Signal

Data table
ID_REF VALUE
14q0_st 1.202099
14qI-1_st 1.950879
14qI-1_x_st 2.370532
14qI-2_st 1.356
14qI-3_x_st 1.034897
14qI-4_st 1.065497
14qI-4_x_st 1.348668
14qI-5_st 1.154813
14qI-6_st 1.438032
14qI-6_x_st 0.9240621
14qI-7_st 1.522029
14qI-8_st 1.161846
14qI-8_x_st 1.374668
14qI-9_x_st 1.040845
14qII-10_st 1.082007
14qII-10_x_st 1.134456
14qII-11_st 1.344033
14qII-11_x_st 1.432375
14qII-12_st 1.129845
14qII-12_x_st 1.025026

Total number of rows: 17870

Table truncated, full table size 450 Kbytes.




Supplementary file Size Download File type/resource
GSM7675792_7B.CEL.gz 703.4 Kb (ftp)(http) CEL
Processed data included within Sample table
Processed data are available on Series record

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