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Sample GSM7675793 Query DataSets for GSM7675793
Status Public on Oct 02, 2023
Title Case 8
Sample type RNA
 
Source name human plasma
Organism Homo sapiens
Characteristics diagnosis: Metabolic syndrome
gender: Female
tissue: Plasma
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from 1 mL plasma using Trizol reagent following the manufacturer’s instructions
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
 
Hybridization protocol FlashTag Biotin HSR RNA labeling kit
Scan protocol Microarrays were scanned using the Affymetrix GeneChip Command Console.
Description Small RNA expression data in human plasma
PlasmaMiRNA MetSyndrome
Data processing Data were analyzed in the R/Bioconductor environment with the software Oligo, pd.mirna.3.0 and Linear Models for Microarray Analysis (LIMMA).
 
Submission date Aug 02, 2023
Last update date Oct 02, 2023
Contact name M Elizabeth Tejero
E-mail(s) etejero@inmegen.gob.mx
Phone +525513912583
Organization name Instituto Nacional de Medicina Genomica, Mexico City
Street address Periferico sur 4809
City Tlalpan
State/province Ciudad de México
ZIP/Postal code 14160
Country Mexico
 
Platform ID GPL16384
Series (1)
GSE239866 MicroRNAs in plasma in metabolic syndrome.

Data table header descriptions
ID_REF
VALUE Log2 RMA Signal

Data table
ID_REF VALUE
14q0_st 1.315163
14qI-1_st 2.499896
14qI-1_x_st 2.04442
14qI-2_st 1.436365
14qI-3_x_st 1.325136
14qI-4_st 1.475623
14qI-4_x_st 1.225514
14qI-5_st 1.136102
14qI-6_st 1.224458
14qI-6_x_st 1.139972
14qI-7_st 1.101986
14qI-8_st 1.408216
14qI-8_x_st 1.079512
14qI-9_x_st 1.241132
14qII-10_st 1.108382
14qII-10_x_st 1.108199
14qII-11_st 1.489686
14qII-11_x_st 1.621966
14qII-12_st 0.9687671
14qII-12_x_st 1.356149

Total number of rows: 17870

Table truncated, full table size 451 Kbytes.




Supplementary file Size Download File type/resource
GSM7675793_8A.CEL.gz 678.6 Kb (ftp)(http) CEL
Processed data included within Sample table
Processed data are available on Series record

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