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Sample GSM7675795 Query DataSets for GSM7675795
Status Public on Oct 02, 2023
Title Case 9
Sample type RNA
 
Source name human plasma
Organism Homo sapiens
Characteristics diagnosis: Metabolic syndrome
gender: Female
tissue: Plasma
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from 1 mL plasma using Trizol reagent following the manufacturer’s instructions
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
 
Hybridization protocol FlashTag Biotin HSR RNA labeling kit
Scan protocol Microarrays were scanned using the Affymetrix GeneChip Command Console.
Description Small RNA expression data in human plasma
PlasmaMiRNA MetSyndrome
Data processing Data were analyzed in the R/Bioconductor environment with the software Oligo, pd.mirna.3.0 and Linear Models for Microarray Analysis (LIMMA).
 
Submission date Aug 02, 2023
Last update date Oct 02, 2023
Contact name M Elizabeth Tejero
E-mail(s) etejero@inmegen.gob.mx
Phone +525513912583
Organization name Instituto Nacional de Medicina Genomica, Mexico City
Street address Periferico sur 4809
City Tlalpan
State/province Ciudad de México
ZIP/Postal code 14160
Country Mexico
 
Platform ID GPL16384
Series (1)
GSE239866 MicroRNAs in plasma in metabolic syndrome.

Data table header descriptions
ID_REF
VALUE Log2 RMA Signal

Data table
ID_REF VALUE
14q0_st 1.342481
14qI-1_st 2.117528
14qI-1_x_st 1.697767
14qI-2_st 1.210495
14qI-3_x_st 1.426241
14qI-4_st 1.298639
14qI-4_x_st 1.208727
14qI-5_st 1.326619
14qI-6_st 1.210495
14qI-6_x_st 1.476871
14qI-7_st 1.341041
14qI-8_st 1.393197
14qI-8_x_st 1.212566
14qI-9_x_st 1.238384
14qII-10_st 1.180122
14qII-10_x_st 1.099427
14qII-11_st 1.361478
14qII-11_x_st 1.459329
14qII-12_st 1.296539
14qII-12_x_st 0.8924368

Total number of rows: 17870

Table truncated, full table size 451 Kbytes.




Supplementary file Size Download File type/resource
GSM7675795_9A.CEL.gz 703.7 Kb (ftp)(http) CEL
Processed data included within Sample table
Processed data are available on Series record

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