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Sample GSM7675796 Query DataSets for GSM7675796
Status Public on Oct 02, 2023
Title Control 9
Sample type RNA
Source name human plasma
Organism Homo sapiens
Characteristics diagnosis: control
gender: Female
tissue: Plasma
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from 1 mL plasma using Trizol reagent following the manufacturer’s instructions
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
Hybridization protocol FlashTag Biotin HSR RNA labeling kit
Scan protocol Microarrays were scanned using the Affymetrix GeneChip Command Console.
Description Small RNA expression data in human plasma
PlasmaMiRNA MetSyndrome
Data processing Data were analyzed in the R/Bioconductor environment with the software Oligo, pd.mirna.3.0 and Linear Models for Microarray Analysis (LIMMA).
Submission date Aug 02, 2023
Last update date Oct 02, 2023
Contact name M Elizabeth Tejero
Phone +525513912583
Organization name Instituto Nacional de Medicina Genomica, Mexico City
Street address Periferico sur 4809
City Tlalpan
State/province Ciudad de México
ZIP/Postal code 14160
Country Mexico
Platform ID GPL16384
Series (1)
GSE239866 MicroRNAs in plasma in metabolic syndrome.

Data table header descriptions
VALUE Log2 RMA Signal

Data table
14q0_st 1.826208
14qI-1_st 2.037869
14qI-1_x_st 1.623081
14qI-2_st 1.710678
14qI-3_x_st 1.346048
14qI-4_st 1.019417
14qI-4_x_st 0.9962472
14qI-5_st 1.566094
14qI-6_st 1.020735
14qI-6_x_st 1.259633
14qI-7_st 1.428955
14qI-8_st 1.773719
14qI-8_x_st 1.125087
14qI-9_x_st 1.113962
14qII-10_st 0.9658739
14qII-10_x_st 1.078207
14qII-11_st 1.530847
14qII-11_x_st 1.306835
14qII-12_st 1.239518
14qII-12_x_st 1.577931

Total number of rows: 17870

Table truncated, full table size 450 Kbytes.

Supplementary file Size Download File type/resource
GSM7675796_9B.CEL.gz 701.2 Kb (ftp)(http) CEL
Processed data included within Sample table
Processed data are available on Series record

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