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Sample GSM768609 Query DataSets for GSM768609
Status Public on Aug 15, 2011
Title oral_severedysplasia_1444
Sample type SAGE
Anchor NlaIII
Tag Count 121966
Tag Length 10
 
Source name oral biopsy, right posterior trigone
Organism Homo sapiens
Characteristics tissue: right posterior trigone
dysplasia: severe / CIS
gender: female
age: 75
smoking status: never smoker
Extracted molecule total RNA
Extraction protocol RNA was isolated by guanidium isothiocyanate and phenol/chloroform extraction.
 
Data processing Raw SAGE tags, excluding linker and ditags.
 
Submission date Jul 28, 2011
Last update date Aug 15, 2011
Contact name Ewan Gibb
E-mail(s) egibb@bccrc.ca
Organization name BC Cancer Agency Research Centre
Street address 675 West 10th Ave
City Vancouver
ZIP/Postal code V5Z 1L3
Country Canada
 
Platform ID GPL4
Series (1)
GSE31021 Profiling long non-coding RNA expression in oral premalignant lesions.

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 619 5075.18
AAAAAAAAAC 1 8.20
AAAAAAAAAG 5 41.00
AAAAAAAAAT 2 16.40
AAAAAAAACA 3 24.60
AAAAAAAACC 2 16.40
AAAAAAAAGA 7 57.39
AAAAAAAAGC 1 8.20
AAAAAAAAGG 7 57.39
AAAAAAAATG 1 8.20
AAAAAAAATT 1 8.20
AAAAAAACAA 2 16.40
AAAAAAACCA 2 16.40
AAAAAAACCC 17 139.38
AAAAAAACTT 1 8.20
AAAAAAAGAA 2 16.40
AAAAAAAGAG 2 16.40
AAAAAAAGCA 1 8.20
AAAAAAAGCT 2 16.40
AAAAAAAGTG 1 8.20

Total number of rows: 53107

Table truncated, full table size 945 Kbytes.




Supplementary data files not provided

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