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Sample GSM77 Query DataSets for GSM77
Status Public on Nov 10, 2001
Title 7B-IME
Sample type RNA
 
Channel 1
Source name 4 day old shoot
Organism Zea mays
Extracted molecule total RNA
 
Channel 2
Source name Immature ear (2.5 cm)
Organism Zea mays
Extracted molecule total RNA
 
 
Description One of duplicate hybridizations.
 
Submission date Jun 13, 2001
Last update date May 27, 2005
Contact name Yangrae Cho
E-mail(s) yacho@sequence.stanford.edu
Phone 650-812-1976
Fax 650-812-1975
Organization name Stanford University
Department Biological Sciences
Lab V. Walbot
Street address 385 Serra Mall
City Stanford University
State/province CA
ZIP/Postal code 94305-8221
Country USA
 
Platform ID GPL12
Series (1)
GSE141 Gene-expression profile comparisons distinguish seven organs of maize

Data table header descriptions
ID_REF
Dia. Feature size
F635 Median Arithmetic median from channel 1
F635 Mean Arithmetic mean calculated as the raw signal divided by the surface area
F635 SD Standard deviation calculated from the mean signal (Channel 1)
B635 Median Arithmetic median of background from channel 1
B635 Mean Arithmetic mean of background (channel 1)
B635 SD Background standard deviation calculated for the mean background signal (channel 1)
F532 Median Arithmetic median from channel 2
F532 Mean Arithmetic mean calculated as the raw signal divided by the surface area (channel 2)
F532 SD Standard deviation calculated from the mean signal (Channel 2)
B532 Median Arithmetic median of background from channel 2
B532 Mean Arithmetic mean of background (channel 2)
B532 SD Background standard deviation calculated for the mean background signal (channel 2)
Rgn Rē Regression root square
F Pixels Area for intensity measurement of a feature
B Pixels Area for background intensity measurement
Flags crude quality:(-)value=bad flagged
VALUE log ratio of PRE_VALUE
PRE_VALUE The calculated ratio between (mean intensity of channel 1-median background)/(mean intensity of ch 2-median background of ch2)

Data table
ID_REF Dia. F635 Median F635 Mean F635 SD B635 Median B635 Mean B635 SD F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD Rgn Rē F Pixels B Pixels Flags VALUE PRE_VALUE
707001A02.x1 140 10832 10921 4068 93 102 69 8551 8547 3593 85 101 75 0.899 156 909 0 0.1072103 1.280
707002E03.y1 130 8602 8616 2601 89 97 46 6587 6288 2030 82 90 38 0.934 120 674 0 0.1379873 1.374
707002G11.y1 130 1189 1252 635 88 95 34 1011 1046 324 83 90 38 0.841 120 731 0 0.0824263 1.209
707003H06.x3 140 7390 7502 2720 87 93 31 5122 5418 2165 83 89 36 0.93 156 832 0 0.1430153 1.390
707004B03.y1 130 1308 1456 622 88 96 35 1860 2021 658 85 94 43 0.812 120 697 0 -0.1505813 0.707
707004G10.x1 130 14157 15119 4835 97 127 302 15344 16574 5662 90 101 42 0.932 120 746 0 -0.0404823 0.911
707001A04.x1 130 4595 4828 1641 106 141 305 9978 10193 3556 98 109 51 0.928 120 745 0 -0.3297543 0.468
707002E04.y1 130 18127 17482 4509 106 123 75 15747 15262 4242 95 111 61 0.935 120 723 0 0.0591853 1.146
707003C01.x3 140 23443 24276 9132 101 113 50 5271 5464 1909 91 107 65 0.918 156 788 0 0.6531163 4.499
707003H07.x2 140 2983 2948 986 93 100 33 3314 3442 1284 87 96 49 0.871 156 782 0 -0.0700703 0.851
707004H03.x2 140 14145 14758 5314 91 95 27 15018 14665 5363 86 90 32 0.912 156 786 0 0.0025983 1.006
707004A11.x2 140 11591 11634 4426 90 94 26 6539 6552 2691 84 90 32 0.888 156 768 0 0.2516383 1.785
707001C09.x1 140 1919 1932 675 90 95 37 2315 2370 756 84 90 29 0.864 156 782 0 -0.0936653 0.806
707002B05.y1 140 3657 3575 1095 90 96 36 5037 4745 1428 85 89 25 0.913 156 786 0 -0.1260983 0.748
707003C02.x2 140 3662 3666 1522 90 94 32 14840 15321 6687 85 89 37 0.898 156 786 0 -0.6289323 0.235
707003H08.x4 140 2627 2732 968 92 100 101 3656 3876 1627 85 93 121 0.882 156 807 0 -0.1573913 0.696
707004G04.x2 140 5405 5229 1765 89 92 18 6117 5813 2255 85 88 24 0.917 156 768 0 -0.0472083 0.897
707004D11.y1 140 5313 5049 1345 89 91 17 5064 4889 1270 83 87 21 0.934 156 784 0 0.0136803 1.032
707001E11.x1 140 11911 12010 4680 90 92 24 18039 17780 6397 84 86 20 0.919 156 786 0 -0.1713403 0.674
707002F05.y1 140 11984 12009 3886 90 95 33 10195 10201 3457 84 89 34 0.913 156 900 0 0.0711453 1.178

Total number of rows: 5760

Table truncated, full table size 541 Kbytes.




Supplementary data files not provided

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