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Sample GSM7717053 Query DataSets for GSM7717053
Status Public on May 17, 2024
Title Adipo-4H
Sample type SRA
 
Source name Bone
Organism Homo sapiens
Characteristics tissue: Bone
cell line: MSC-8011L
cell type: Mesenchymal Stem Cell
Extracted molecule total RNA
Extraction protocol Cells were dissociated from either hydrogels or tissue culture plasticware.
Single-cell rna-sequencing was performed using 10x Genomics Single Cell 3' Gene Expression protocol.
 
Library strategy RNA-Seq
Library source transcriptomic single cell
Library selection cDNA
Instrument model Illumina NovaSeq 6000
 
Data processing The demultiplexing, barcoded processing and gene counting were made using the Cell Ranger software (https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/what-is-cell-ranger)
Seurat was used for quality control analysis, data processing, and visualization.
Assembly: hg38
Supplementary files format and content: Data provided for single-cell RNA-Seq is the raw count matrix HDF5 file from Cell Ranger
 
Submission date Aug 17, 2023
Last update date May 17, 2024
Contact name Danh Truong
E-mail(s) dtruong4@mdanderson.org
Organization name MD Anderson Cancer Center
Street address 1515 Holcombe Blvd
City Houston
ZIP/Postal code TX
Country USA
 
Platform ID GPL24676
Series (1)
GSE241130 In Vitro Mesenchymal Stem Cell Differentiation Landscape
Relations
BioSample SAMN37041623
SRA SRX21404642

Supplementary file Size Download File type/resource
GSM7717053_Adipo-4H_analysis_filtered_feature_bc_matrix.h5 8.4 Mb (ftp)(http) H5
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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