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Sample GSM773410 Query DataSets for GSM773410
Status Public on Oct 11, 2011
Title Splenic marginal zone lymphoma SMZL_Agilent_38
Sample type genomic
 
Channel 1
Source name DNA SMZL
Organism Homo sapiens
Characteristics tissue: spleen
disease state: Splenic marginal zone lymphomas
Extracted molecule genomic DNA
Extraction protocol The DNA was extracted using the standard phenol-chloroform method. All DNA was quantified using the Nanodrop spectrophotometer (ND-1000, NanoDrop Technologies, Wilmington, DE USA). DNA quality was assessed by the 260:280 ratio and its integrity by agarose gel ethidium bromide visualization.
Label Cy3
Label protocol standard Agilent protocol, see see manufacturer's web site at http://www.agilent.com/
 
Channel 2
Source name Control DNA
Organism Homo sapiens
Characteristics disease state: healthy
sample type: human placenta of healthy donors
tissue: placenta
Extracted molecule genomic DNA
Extraction protocol The DNA was extracted using the standard phenol-chloroform method. All DNA was quantified using the Nanodrop spectrophotometer (ND-1000, NanoDrop Technologies, Wilmington, DE USA). DNA quality was assessed by the 260:280 ratio and its integrity by agarose gel ethidium bromide visualization.
Label Cy5
Label protocol standard Agilent protocol, see see manufacturer's web site at http://www.agilent.com/
 
 
Hybridization protocol standard Agilent protocol, see see manufacturer's web site at http://www.agilent.com/
Scan protocol standard Agilent protocol, see see manufacturer's web site at http://www.agilent.com/
Data processing standard Agilent protocol, see see manufacturer's web site at http://www.agilent.com/
 
Submission date Aug 04, 2011
Last update date Oct 11, 2011
Contact name Cristina Robledo
E-mail(s) crisrmontero@hotmail.com
Organization name CIC
Street address Campus Miguel de Unamuno
City Salamanca
ZIP/Postal code 37007
Country Spain
 
Platform ID GPL13905
Series (1)
GSE31203 Molecular characterization of the chromosome 7 in SMZL

Data table header descriptions
ID_REF
VALUE normalized log2 test/reference

Data table
ID_REF VALUE
1 0.0038359339
2 0.0000000000
3 -0.0308584758
4 0.1271918925
5 -0.0145495358
6 0.0302084257
7 -0.0564600113
8 0.0683073935
9 0.0898764023
10 -0.0079851188
11 0.0174250557
12 0.1997627289
13 0.0591386772
14 -0.0202915886
15 0.1779979801
16 0.0167894377
17 -0.1346346930
18 -0.0375705628
19 0.0699837947
20 0.0317492296

Total number of rows: 43866

Table truncated, full table size 824 Kbytes.




Supplementary file Size Download File type/resource
GSM773410_38_SMZL_Agilent.txt.gz 12.3 Mb (ftp)(http) TXT
Processed data included within Sample table

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