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Sample GSM773457 Query DataSets for GSM773457
Status Public on Oct 11, 2011
Title Splenic marginal zone lymphoma SMZL_NimbleGen4x_62
Sample type genomic
 
Channel 1
Source name DNA SMZL
Organism Homo sapiens
Characteristics tissue: peripheral blood
disease state: Splenic marginal zone lymphomas
Extracted molecule genomic DNA
Extraction protocol The DNA was extracted using the standard phenol-chloroform method. All DNA was quantified using the Nanodrop spectrophotometer (ND-1000, NanoDrop Technologies, Wilmington, DE USA). DNA quality was assessed by the 260:280 ratio and its integrity by agarose gel ethidium bromide visualization.
Label Cy3
Label protocol standard NimbleGen protocol, see manufacturer's web site at http://www.nimblegen.com
 
Channel 2
Source name Control DNA
Organism Homo sapiens
Characteristics disease state: healthy
sample type: human placenta of healthy donors
tissue: placenta
Extracted molecule genomic DNA
Extraction protocol The DNA was extracted using the standard phenol-chloroform method. All DNA was quantified using the Nanodrop spectrophotometer (ND-1000, NanoDrop Technologies, Wilmington, DE USA). DNA quality was assessed by the 260:280 ratio and its integrity by agarose gel ethidium bromide visualization.
Label Cy5
Label protocol standard NimbleGen protocol, see manufacturer's web site at http://www.nimblegen.com
 
 
Hybridization protocol standard NimbleGen protocol, see manufacturer's web site at http://www.nimblegen.com
Scan protocol standard NimbleGen protocol, see manufacturer's web site at http://www.nimblegen.com
Data processing standard NimbleGen protocol, see manufacturer's web site at http://www.nimblegen.com
 
Submission date Aug 04, 2011
Last update date Oct 11, 2011
Contact name Cristina Robledo
E-mail(s) crisrmontero@hotmail.com
Organization name CIC
Street address Campus Miguel de Unamuno
City Salamanca
ZIP/Postal code 37007
Country Spain
 
Platform ID GPL13906
Series (1)
GSE31203 Molecular characterization of the chromosome 7 in SMZL

Data table header descriptions
ID_REF
VALUE normalized log2 test/reference

Data table
ID_REF VALUE
CHR01FS000017781 0.197
CHR01FS000043737 0.121
CHR01FS000095420 -0.554
CHR01FS000225670 -0.268
CHR01FS000349214 -0.152
CHR01FS000393089 -0.57
CHR01FS000432481 -0.035
CHR01FS000518533 -0.154
CHR01FS000553694 -0.705
CHR01FS000581914 -0.204
CHR01FS000620150 0.124
CHR01FS000683750 0
CHR01FS000729941 0.163
CHR01FS000765588 0.356
CHR01FS000812807 -0.111
CHR01FS000859029 -0.226
CHR01FS000881258 0.326
CHR01FS000933694 0.267
CHR01FS000967830 -0.245
CHR01FS001018317 0.097

Total number of rows: 71341

Table truncated, full table size 1625 Kbytes.




Supplementary file Size Download File type/resource
GSM773457_62_SMZL_NimbleGen.txt.gz 2.8 Mb (ftp)(http) TXT
Processed data included within Sample table

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