NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM773463 Query DataSets for GSM773463
Status Public on Oct 11, 2011
Title Splenic marginal zone lymphoma SMZL_NimbleGen CHR7_14
Sample type genomic
 
Channel 1
Source name DNA SMZL
Organism Homo sapiens
Characteristics tissue: spleen
disease state: Splenic marginal zone lymphomas
Extracted molecule genomic DNA
Extraction protocol The DNA was extracted using the standard phenol-chloroform method. All DNA was quantified using the Nanodrop spectrophotometer (ND-1000, NanoDrop Technologies, Wilmington, DE USA). DNA quality was assessed by the 260:280 ratio and its integrity by agarose gel ethidium bromide visualization.
Label Cy3
Label protocol standard NimbleGen protocol, see manufacturer's web site at http://www.nimblegen.com
 
Channel 2
Source name Control DNA
Organism Homo sapiens
Characteristics disease state: healthy
sample type: human placenta of healthy donors
tissue: placenta
Extracted molecule genomic DNA
Extraction protocol The DNA was extracted using the standard phenol-chloroform method. All DNA was quantified using the Nanodrop spectrophotometer (ND-1000, NanoDrop Technologies, Wilmington, DE USA). DNA quality was assessed by the 260:280 ratio and its integrity by agarose gel ethidium bromide visualization.
Label Cy5
Label protocol standard NimbleGen protocol, see manufacturer's web site at http://www.nimblegen.com
 
 
Hybridization protocol standard NimbleGen protocol, see manufacturer's web site at http://www.nimblegen.com
Scan protocol standard NimbleGen protocol, see manufacturer's web site at http://www.nimblegen.com
Data processing standard NimbleGen protocol, see manufacturer's web site at http://www.nimblegen.com
 
Submission date Aug 04, 2011
Last update date Oct 11, 2011
Contact name Cristina Robledo
E-mail(s) crisrmontero@hotmail.com
Organization name CIC
Street address Campus Miguel de Unamuno
City Salamanca
ZIP/Postal code 37007
Country Spain
 
Platform ID GPL13907
Series (1)
GSE31203 Molecular characterization of the chromosome 7 in SMZL

Data table header descriptions
ID_REF
VALUE normalized log2 test/reference

Data table
ID_REF VALUE
CHR07FS000114766 0.136
CHR07FS000126521 0.995
CHR07FS000130067 0.499
CHR07FS000132542 0.264
CHR07FS000134922 0.203
CHR07FS000135577 0.325
CHR07FS000135907 0.416
CHR07FS000136202 0.311
CHR07FS000136887 -0.176
CHR07FS000136932 -0.49
CHR07FS000137467 -0.753
CHR07FS000137837 0.371
CHR07FS000138042 -0.478
CHR07FS000138442 0.175
CHR07FS000138877 0.124
CHR07FS000139187 0.489
CHR07FS000139612 0.006
CHR07FS000139762 0.09
CHR07FS000140127 -0.216
CHR07FS000140532 -0.325

Total number of rows: 385110

Table truncated, full table size 8794 Kbytes.




Supplementary file Size Download File type/resource
GSM773463_14_SMZL_NimbleGen_7q.txt.gz 15.1 Mb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap