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Sample GSM77494 Query DataSets for GSM77494
Status Public on Apr 14, 2006
Title 1EP8
Sample type genomic
 
Channel 1
Source name Pooled reference DNA from either 4 healthy males or females of the opposite sex compared to the sample.
Organism Homo sapiens
Characteristics 635nm
Extracted molecule genomic DNA
Label Cy5
 
Channel 2
Source name Isolated tumor DNA, derived from ependymal tumors.
Organism Homo sapiens
Characteristics 532nm
Extracted molecule genomic DNA
Label Cy3
 
 
Description Comparison of normal versus tumor DNA (ependymoma). Whole-genome screening of DNA-copy number changes by array-based or matrix comparative genomic hybridization (matrix-CGH).
Data processing Genepix result files
 
Submission date Oct 11, 2005
Last update date Apr 13, 2006
Contact name Frank Mendrzyk
E-mail(s) f.mendrzyk@dkfz.de
Phone 49-6221-424676
Organization name German Cancer Research Center (DKFZ)
Street address
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL2920
Series (1)
GSE3435 Human ependymomas.

Data table header descriptions
ID_REF
VALUE Raw log ratio (Cy5/Cy3).
CH1_RAW Raw median signal intensity in Cy5-channel (635nm).
CH1_MEAN Raw mean signal intensity in Cy5-channel (635nm).
CH1_SD Signal intensity standard deviation in Cy5-channel (635nm).
CH1_BKD_RAW Raw median background intensity in Cy5-channel (635nm).
CH1_BKD_MEAN Raw mean background intensity in Cy5-channel (635nm).
CH1_BKD_SD Background intensity standard deviation in Cy5-channel (635nm).
CH1_AREA Signal area in Cy5-channel (635nm).
CH1_BKD_AREA Background area in Cy5-channel (635nm).
CH2_RAW Raw median signal intensity in Cy3-channel (532nm).
CH2_MEAN Raw mean signal intensity in Cy3-channel (532nm).
CH2_SD Signal intensity standard deviation in Cy3-channel (532nm).
CH2_BKD_RAW Raw median background intensity in Cy3-channel (532nm).
CH2_BKD_MEAN Raw mean background intensity in Cy3-channel (532nm).
CH2_BKD_SD Background intensity standard deviation in Cy3-channel (532nm).
CH2_AREA Signal area in Cy3-channel (532nm).
CH2_BKD_AREA Background area in Cy3-channel (532nm).

Data table
ID_REF VALUE CH1_RAW CH1_MEAN CH1_SD CH1_BKD_RAW CH1_BKD_MEAN CH1_BKD_SD CH1_AREA CH1_BKD_AREA CH2_RAW CH2_MEAN CH2_SD CH2_BKD_RAW CH2_BKD_MEAN CH2_BKD_SD CH2_AREA CH2_BKD_AREA
G000001-1 -0.108 4617 4635 1587 650 686 233 52 420 4591 4693 1835 316 318 71 52 420
G000001-2 -0.217 4586 4483 1355 616 645 208 52 420 4917 4742 1565 304 310 68 52 420
G000001-3 -0.227 4920 4826 1295 626 632 146 52 420 5323 5224 1520 297 302 67 52 420
G000002-1 -0.117 20435 20252 3341 622 633 157 52 420 21803 21588 3325 315 319 68 52 420
G000002-2 0.016 21047 20446 3969 588 607 141 52 420 20531 20064 4591 299 302 65 52 420
G000002-3 -0.005 20464 19522 3919 557 568 134 52 420 20265 19867 4491 283 293 74 52 420
G000003-1 -0.11 12637 12313 2742 667 688 158 52 340 13249 12890 2934 331 339 87 52 340
G000003-2 -0.118 11989 11101 3171 656 666 137 52 420 12618 11809 2985 319 324 69 52 420
G000003-3 -0.094 12773 12302 2692 631 646 150 52 340 13269 13089 2949 313 316 67 52 340
G000004-1 0.02 16318 16349 3034 592 607 134 52 420 15810 15460 3349 297 304 64 52 420
G000004-2 -0.025 15895 15943 2609 573 584 134 52 420 15883 15600 2925 288 292 61 52 420
G000004-3 0 19233 18512 3790 597 602 139 52 420 18923 18376 3622 283 291 71 52 420
G000005-1 -0.054 28273 27176 5274 645 659 180 52 340 28995 28322 4939 313 332 126 52 340
G000005-2 -0.038 36810 34476 9647 602 613 169 52 420 37465 35495 8317 298 311 124 52 420
G000005-3 -0.026 35310 32874 8197 570 595 172 52 420 35672 33175 8868 288 298 108 52 420
G000006-1 -0.188 24991 24074 5622 569 583 165 52 420 28128 26572 5393 299 308 76 52 420
G000006-2 -0.147 25360 24703 4936 546 561 133 52 420 27769 26621 6211 296 304 82 52 420
G000006-3 -0.199 24973 24373 5140 568 603 294 52 420 28293 26395 5814 288 299 87 52 420
G000007-1 -0.152 12321 11971 3061 639 676 272 52 420 13279 13004 2864 299 312 86 52 420
G000007-2 -0.079 12079 11661 3028 632 646 143 52 420 12396 12379 3173 305 312 70 52 420

Total number of rows: 19395

Table truncated, full table size 1634 Kbytes.




Supplementary data files not provided

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