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Sample GSM77500 Query DataSets for GSM77500
Status Public on Apr 14, 2006
Title 1EP14
Sample type genomic
 
Channel 1
Source name Pooled reference DNA from either 4 healthy males or females of the opposite sex compared to the sample.
Organism Homo sapiens
Characteristics 635nm
Extracted molecule genomic DNA
Label Cy5
 
Channel 2
Source name Isolated tumor DNA, derived from ependymal tumors.
Organism Homo sapiens
Characteristics 532nm
Extracted molecule genomic DNA
Label Cy3
 
 
Description Comparison of normal versus tumor DNA (ependymoma). Whole-genome screening of DNA-copy number changes by array-based or matrix comparative genomic hybridization (matrix-CGH).
Data processing Genepix result files
 
Submission date Oct 11, 2005
Last update date Apr 13, 2006
Contact name Frank Mendrzyk
E-mail(s) f.mendrzyk@dkfz.de
Phone 49-6221-424676
Organization name German Cancer Research Center (DKFZ)
Street address
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL2920
Series (1)
GSE3435 Human ependymomas.

Data table header descriptions
ID_REF
VALUE Raw log ratio (Cy5/Cy3).
CH1_RAW Raw median signal intensity in Cy5-channel (635nm).
CH1_MEAN Raw mean signal intensity in Cy5-channel (635nm).
CH1_SD Signal intensity standard deviation in Cy5-channel (635nm).
CH1_BKD_RAW Raw median background intensity in Cy5-channel (635nm).
CH1_BKD_MEAN Raw mean background intensity in Cy5-channel (635nm).
CH1_BKD_SD Background intensity standard deviation in Cy5-channel (635nm).
CH1_AREA Signal area in Cy5-channel (635nm).
CH1_BKD_AREA Background area in Cy5-channel (635nm).
CH2_RAW Raw median signal intensity in Cy3-channel (532nm).
CH2_MEAN Raw mean signal intensity in Cy3-channel (532nm).
CH2_SD Signal intensity standard deviation in Cy3-channel (532nm).
CH2_BKD_RAW Raw median background intensity in Cy3-channel (532nm).
CH2_BKD_MEAN Raw mean background intensity in Cy3-channel (532nm).
CH2_BKD_SD Background intensity standard deviation in Cy3-channel (532nm).
CH2_AREA Signal area in Cy3-channel (532nm).
CH2_BKD_AREA Background area in Cy3-channel (532nm).

Data table
ID_REF VALUE CH1_RAW CH1_MEAN CH1_SD CH1_BKD_RAW CH1_BKD_MEAN CH1_BKD_SD CH1_AREA CH1_BKD_AREA CH2_RAW CH2_MEAN CH2_SD CH2_BKD_RAW CH2_BKD_MEAN CH2_BKD_SD CH2_AREA CH2_BKD_AREA
G000001-1 0.087 6177 5983 2461 515 688 993 52 287 5567 5550 1984 236 1794 8431 52 287
G000001-2 0.159 605 2367 3060 509 652 1096 256 1468 327 8329 16554 241 996 5435 256 1468
G000001-3 0.19 6122 5959 1997 503 520 183 52 333 5168 5112 1608 244 249 65 52 333
G000002-1 0.035 19628 18165 3976 474 483 127 52 420 18930 17312 4453 234 240 65 52 420
G000002-2 0.08 19503 18164 3641 483 486 114 52 420 18219 16847 4039 226 234 63 52 420
G000002-3 0.065 19931 19046 3865 496 506 111 52 420 18798 17698 3992 221 228 66 52 420
G000003-1 -0.018 10644 10254 3138 500 509 130 52 340 10509 10147 3027 240 249 66 52 340
G000003-2 -0.047 10485 9814 2900 503 522 155 52 420 10553 9960 2698 244 249 62 52 420
G000003-3 0.037 11001 10114 2970 504 522 136 52 414 10471 9812 3338 242 244 64 52 414
G000004-1 -0.013 13914 13936 2738 463 478 131 52 340 13820 13827 2690 249 255 60 52 340
G000004-2 0.034 13857 13700 2877 496 502 123 52 340 13300 13282 2699 254 259 66 52 340
G000004-3 0.035 14165 13598 2629 507 507 123 52 420 13580 13455 2609 248 250 63 52 420
G000005-1 0.123 25606 24368 6001 455 469 119 52 340 23341 21974 5434 251 255 69 52 340
G000005-2 0.157 26339 25381 5415 456 473 123 52 420 23462 21851 5576 240 246 65 52 420
G000005-3 0.128 26869 26383 6115 477 489 120 52 420 24385 23379 6541 230 239 64 52 420
G000006-1 0.016 18700 17982 3448 413 427 118 52 420 18291 17384 4266 201 209 58 52 420
G000006-2 0.012 17522 17490 3661 429 440 135 52 420 17156 16990 4409 210 214 70 52 420
G000006-3 -0.021 19330 19387 3195 426 437 112 52 340 19390 19088 3475 207 210 54 52 340
G000007-1 -0.031 13065 12692 2761 499 505 115 32 236 13079 12862 2913 244 249 68 32 236
G000007-2 -0.02 12889 11894 2661 501 510 122 32 236 12814 11951 2864 250 250 72 32 236

Total number of rows: 19395

Table truncated, full table size 1602 Kbytes.




Supplementary data files not provided

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