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Sample GSM77507 Query DataSets for GSM77507
Status Public on Apr 14, 2006
Title 1EP22
Sample type genomic
 
Channel 1
Source name Pooled reference DNA from either 4 healthy males or females of the opposite sex compared to the sample.
Organism Homo sapiens
Characteristics 635nm
Extracted molecule genomic DNA
Label Cy5
 
Channel 2
Source name Isolated tumor DNA, derived from ependymal tumors.
Organism Homo sapiens
Characteristics 532nm
Extracted molecule genomic DNA
Label Cy3
 
 
Description Comparison of normal versus tumor DNA (ependymoma). Whole-genome screening of DNA-copy number changes by array-based or matrix comparative genomic hybridization (matrix-CGH).
Data processing Genepix result files
 
Submission date Oct 11, 2005
Last update date Apr 13, 2006
Contact name Frank Mendrzyk
E-mail(s) f.mendrzyk@dkfz.de
Phone 49-6221-424676
Organization name German Cancer Research Center (DKFZ)
Street address
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL2920
Series (1)
GSE3435 Human ependymomas.

Data table header descriptions
ID_REF
VALUE Raw log ratio (Cy5/Cy3).
CH1_RAW Raw median signal intensity in Cy5-channel (635nm).
CH1_MEAN Raw mean signal intensity in Cy5-channel (635nm).
CH1_SD Signal intensity standard deviation in Cy5-channel (635nm).
CH1_BKD_RAW Raw median background intensity in Cy5-channel (635nm).
CH1_BKD_MEAN Raw mean background intensity in Cy5-channel (635nm).
CH1_BKD_SD Background intensity standard deviation in Cy5-channel (635nm).
CH1_AREA Signal area in Cy5-channel (635nm).
CH1_BKD_AREA Background area in Cy5-channel (635nm).
CH2_RAW Raw median signal intensity in Cy3-channel (532nm).
CH2_MEAN Raw mean signal intensity in Cy3-channel (532nm).
CH2_SD Signal intensity standard deviation in Cy3-channel (532nm).
CH2_BKD_RAW Raw median background intensity in Cy3-channel (532nm).
CH2_BKD_MEAN Raw mean background intensity in Cy3-channel (532nm).
CH2_BKD_SD Background intensity standard deviation in Cy3-channel (532nm).
CH2_AREA Signal area in Cy3-channel (532nm).
CH2_BKD_AREA Background area in Cy3-channel (532nm).

Data table
ID_REF VALUE CH1_RAW CH1_MEAN CH1_SD CH1_BKD_RAW CH1_BKD_MEAN CH1_BKD_SD CH1_AREA CH1_BKD_AREA CH2_RAW CH2_MEAN CH2_SD CH2_BKD_RAW CH2_BKD_MEAN CH2_BKD_SD CH2_AREA CH2_BKD_AREA
G000001-1 -0.053 5138 5572 1817 557 581 158 52 340 5019 5145 1602 265 269 69 52 340
G000001-2 -0.121 5178 5020 1647 557 573 151 52 340 5297 5387 1651 272 277 80 52 340
G000001-3 -0.039 5435 5043 2053 623 639 161 52 340 5237 4994 1630 293 307 99 52 340
G000002-1 0.121 19089 19273 2755 579 592 155 52 420 17286 17445 2080 262 268 81 52 420
G000002-2 0.224 17027 17308 3387 587 600 162 52 420 14369 14334 2824 291 305 116 52 420
G000002-3 0.116 18440 18648 3602 571 586 155 52 420 16747 16882 2692 261 271 81 52 420
G000003-1 0.151 11441 11614 3345 597 602 213 52 340 10030 9980 3134 264 269 76 52 340
G000003-2 0.228 10868 10842 4032 565 580 158 52 420 9060 8622 3234 266 279 101 52 420
G000003-3 0.212 11471 11383 2950 584 594 156 52 340 9655 9886 2359 255 257 64 52 340
G000004-1 0.265 18658 19143 3422 575 716 2469 52 340 15312 15573 2951 266 288 340 52 340
G000004-2 0.412 19384 19753 3828 565 681 2224 52 420 14402 14582 3099 260 292 312 52 420
G000004-3 0.34 18977 19332 3314 573 587 145 52 420 14798 15437 2698 259 268 76 52 420
G000005-1 0.207 29165 30774 9311 577 595 163 52 340 25107 26405 7390 343 356 120 52 340
G000005-2 0.083 27702 26608 5715 589 629 345 52 340 25933 25226 4896 340 395 473 52 340
G000005-3 0.06 26836 26663 5368 588 797 1060 52 340 25501 25146 4761 320 617 1557 52 340
G000006-1 0.287 19623 19355 3692 531 544 148 52 340 15925 15394 4089 279 287 87 52 340
G000006-2 0.228 21835 21426 6009 497 504 140 52 340 18480 17833 6055 262 271 79 52 340
G000006-3 0.073 21577 21532 4888 505 518 160 52 340 20306 20434 3679 276 285 81 52 340
G000007-1 0.123 12903 13676 3731 580 598 170 32 236 11565 11727 2670 248 256 72 32 236
G000007-2 0.039 10578 10456 4379 575 586 177 52 340 9987 9122 3750 248 256 69 52 340

Total number of rows: 19395

Table truncated, full table size 1614 Kbytes.




Supplementary data files not provided

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