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Sample GSM77508 Query DataSets for GSM77508
Status Public on Apr 14, 2006
Title 1EP23
Sample type genomic
 
Channel 1
Source name Pooled reference DNA from either 4 healthy males or females of the opposite sex compared to the sample.
Organism Homo sapiens
Characteristics 635nm
Extracted molecule genomic DNA
Label Cy5
 
Channel 2
Source name Isolated tumor DNA, derived from ependymal tumors.
Organism Homo sapiens
Characteristics 532nm
Extracted molecule genomic DNA
Label Cy3
 
 
Description Comparison of normal versus tumor DNA (ependymoma). Whole-genome screening of DNA-copy number changes by array-based or matrix comparative genomic hybridization (matrix-CGH).
Data processing Genepix result files
 
Submission date Oct 11, 2005
Last update date Apr 13, 2006
Contact name Frank Mendrzyk
E-mail(s) f.mendrzyk@dkfz.de
Phone 49-6221-424676
Organization name German Cancer Research Center (DKFZ)
Street address
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL2920
Series (1)
GSE3435 Human ependymomas.

Data table header descriptions
ID_REF
VALUE Raw log ratio (Cy5/Cy3).
CH1_RAW Raw median signal intensity in Cy5-channel (635nm).
CH1_MEAN Raw mean signal intensity in Cy5-channel (635nm).
CH1_SD Signal intensity standard deviation in Cy5-channel (635nm).
CH1_BKD_RAW Raw median background intensity in Cy5-channel (635nm).
CH1_BKD_MEAN Raw mean background intensity in Cy5-channel (635nm).
CH1_BKD_SD Background intensity standard deviation in Cy5-channel (635nm).
CH1_AREA Signal area in Cy5-channel (635nm).
CH1_BKD_AREA Background area in Cy5-channel (635nm).
CH2_RAW Raw median signal intensity in Cy3-channel (532nm).
CH2_MEAN Raw mean signal intensity in Cy3-channel (532nm).
CH2_SD Signal intensity standard deviation in Cy3-channel (532nm).
CH2_BKD_RAW Raw median background intensity in Cy3-channel (532nm).
CH2_BKD_MEAN Raw mean background intensity in Cy3-channel (532nm).
CH2_BKD_SD Background intensity standard deviation in Cy3-channel (532nm).
CH2_AREA Signal area in Cy3-channel (532nm).
CH2_BKD_AREA Background area in Cy3-channel (532nm).

Data table
ID_REF VALUE CH1_RAW CH1_MEAN CH1_SD CH1_BKD_RAW CH1_BKD_MEAN CH1_BKD_SD CH1_AREA CH1_BKD_AREA CH2_RAW CH2_MEAN CH2_SD CH2_BKD_RAW CH2_BKD_MEAN CH2_BKD_SD CH2_AREA CH2_BKD_AREA
G000001-1 0.103 6859 6808 2382 626 635 146 52 340 6082 5911 1977 277 279 68 52 340
G000001-2 0.123 7952 6922 2511 611 618 139 52 340 7005 6475 2273 263 274 78 52 340
G000001-3 -0.222 6800 6511 2380 605 622 139 52 340 7504 7147 2383 276 287 77 52 340
G000002-1 -0.014 17513 17116 3156 562 575 139 52 420 17368 17039 3240 257 262 65 52 420
G000002-2 -0.264 16327 16189 2519 528 537 126 52 340 19220 19132 2947 255 258 59 52 340
G000002-3 -0.03 17444 16584 3973 533 548 140 52 420 17508 17277 4082 245 252 64 52 420
G000003-1 -0.02 12702 12193 3700 636 648 163 52 340 12517 11758 2920 281 295 96 52 340
G000003-2 -0.29 10870 9986 2808 588 600 145 52 340 12834 11761 3007 263 277 89 52 340
G000003-3 -0.143 11572 11030 3457 587 597 146 52 340 12392 11388 2910 260 266 66 52 340
G000004-1 -0.014 16709 15983 3818 625 631 148 52 340 16532 15715 3836 289 295 74 52 340
G000004-2 0.032 16795 15485 4019 628 629 156 52 340 16087 14733 3568 276 282 71 52 340
G000004-3 -0.038 16512 16046 4743 606 630 249 52 340 16600 15881 4736 272 281 87 52 340
G000005-1 0.087 31331 31184 7217 619 633 165 52 340 29201 28431 6410 280 301 105 52 340
G000005-2 0.107 30436 27399 8632 597 621 191 52 340 27978 25055 7946 276 299 155 52 340
G000005-3 0.066 28901 27308 7683 586 634 349 52 340 27329 25998 6825 273 298 193 52 340
G000006-1 -0.093 21402 19043 5532 489 499 123 52 340 22546 20053 5550 246 247 61 52 340
G000006-2 -0.121 20957 19490 5688 496 509 127 52 420 22488 20392 6802 230 233 61 52 420
G000006-3 -0.166 21845 20185 6343 477 483 133 52 420 24192 22593 6081 225 232 62 52 420
G000007-1 0.049 12246 11188 4392 634 656 158 52 340 11514 10370 4141 288 290 66 52 340
G000007-2 0.098 12176 11119 4001 642 663 152 52 340 11052 10324 3631 274 279 64 52 340

Total number of rows: 19395

Table truncated, full table size 1617 Kbytes.




Supplementary data files not provided

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