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Sample GSM77513 Query DataSets for GSM77513
Status Public on Apr 14, 2006
Title 1EP31
Sample type genomic
 
Channel 1
Source name Pooled reference DNA from either 4 healthy males or females of the opposite sex compared to the sample.
Organism Homo sapiens
Characteristics 635nm
Extracted molecule genomic DNA
Label Cy5
 
Channel 2
Source name Isolated tumor DNA, derived from ependymal tumors.
Organism Homo sapiens
Characteristics 532nm
Extracted molecule genomic DNA
Label Cy3
 
 
Description Comparison of normal versus tumor DNA (ependymoma). Whole-genome screening of DNA-copy number changes by array-based or matrix comparative genomic hybridization (matrix-CGH).
Data processing Genepix result files
 
Submission date Oct 11, 2005
Last update date Apr 13, 2006
Contact name Frank Mendrzyk
E-mail(s) f.mendrzyk@dkfz.de
Phone 49-6221-424676
Organization name German Cancer Research Center (DKFZ)
Street address
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL2920
Series (1)
GSE3435 Human ependymomas.

Data table header descriptions
ID_REF
VALUE Raw log ratio (Cy5/Cy3).
CH1_RAW Raw median signal intensity in Cy5-channel (635nm).
CH1_MEAN Raw mean signal intensity in Cy5-channel (635nm).
CH1_SD Signal intensity standard deviation in Cy5-channel (635nm).
CH1_BKD_RAW Raw median background intensity in Cy5-channel (635nm).
CH1_BKD_MEAN Raw mean background intensity in Cy5-channel (635nm).
CH1_BKD_SD Background intensity standard deviation in Cy5-channel (635nm).
CH1_AREA Signal area in Cy5-channel (635nm).
CH1_BKD_AREA Background area in Cy5-channel (635nm).
CH2_RAW Raw median signal intensity in Cy3-channel (532nm).
CH2_MEAN Raw mean signal intensity in Cy3-channel (532nm).
CH2_SD Signal intensity standard deviation in Cy3-channel (532nm).
CH2_BKD_RAW Raw median background intensity in Cy3-channel (532nm).
CH2_BKD_MEAN Raw mean background intensity in Cy3-channel (532nm).
CH2_BKD_SD Background intensity standard deviation in Cy3-channel (532nm).
CH2_AREA Signal area in Cy3-channel (532nm).
CH2_BKD_AREA Background area in Cy3-channel (532nm).

Data table
ID_REF VALUE CH1_RAW CH1_MEAN CH1_SD CH1_BKD_RAW CH1_BKD_MEAN CH1_BKD_SD CH1_AREA CH1_BKD_AREA CH2_RAW CH2_MEAN CH2_SD CH2_BKD_RAW CH2_BKD_MEAN CH2_BKD_SD CH2_AREA CH2_BKD_AREA
G000001-1 0.164 3116 3075 731 432 436 132 32 236 2610 2563 667 215 228 87 32 236
G000001-2 0.178 3229 3140 772 393 408 138 32 236 2717 2736 644 211 215 57 32 236
G000001-3 -0.133 2579 2584 555 346 354 106 32 236 2658 2622 592 209 221 71 32 236
G000002-1 0.139 14166 13931 1915 384 407 200 52 340 12728 12748 1589 209 231 138 52 340
G000002-2 0.007 12735 12411 2207 345 354 104 52 340 12532 11941 2350 206 217 83 52 340
G000002-3 -0.067 10915 10321 2858 362 401 614 52 420 11259 10943 1942 207 223 108 52 420
G000003-1 0.027 6149 6427 1949 418 424 141 52 340 5845 6194 1967 220 227 79 52 340
G000003-2 0.051 7420 7000 1986 404 426 250 52 340 6988 6387 2224 216 223 70 52 340
G000003-3 -0.23 6851 6674 2066 393 419 179 52 340 7786 7267 2591 212 222 64 52 340
G000004-1 0.09 14927 14465 2685 410 423 120 52 420 13869 13500 2463 229 240 106 52 420
G000004-2 0.086 15127 14924 1874 402 420 118 52 340 14092 13640 2258 220 224 58 52 340
G000004-3 0.036 15391 14268 3762 393 423 158 52 420 14846 13616 3591 221 228 64 52 420
G000005-1 0.25 19049 18638 3724 423 456 173 52 340 15890 15552 3110 227 239 101 52 340
G000005-2 0.282 17748 16388 4614 433 474 330 52 420 14476 14159 3316 239 283 365 52 420
G000005-3 0.269 19582 18649 3626 431 465 305 52 340 16121 15231 3421 233 275 384 52 340
G000006-1 0.132 11756 11579 2040 396 421 165 52 340 10580 10393 2136 215 231 117 52 340
G000006-2 0.063 11792 11654 1882 385 420 216 52 420 11139 11085 1871 220 248 231 52 420
G000006-3 0.081 11366 11571 2216 374 398 177 52 420 10603 10829 2210 214 234 146 52 420
G000007-1 0.053 9193 8596 2827 432 463 181 52 340 8675 8186 2023 229 239 91 52 340
G000007-2 0.078 8536 8005 2641 452 471 155 52 420 7897 7668 1783 237 242 80 52 420

Total number of rows: 19395

Table truncated, full table size 1614 Kbytes.




Supplementary data files not provided

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