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Sample GSM77518 Query DataSets for GSM77518
Status Public on Apr 14, 2006
Title 1EP38
Sample type genomic
 
Channel 1
Source name Pooled reference DNA from either 4 healthy males or females of the opposite sex compared to the sample.
Organism Homo sapiens
Characteristics 635nm
Extracted molecule genomic DNA
Label Cy5
 
Channel 2
Source name Isolated tumor DNA, derived from ependymal tumors.
Organism Homo sapiens
Characteristics 532nm
Extracted molecule genomic DNA
Label Cy3
 
 
Description Comparison of normal versus tumor DNA (ependymoma). Whole-genome screening of DNA-copy number changes by array-based or matrix comparative genomic hybridization (matrix-CGH).
Data processing Genepix result files
 
Submission date Oct 11, 2005
Last update date Apr 13, 2006
Contact name Frank Mendrzyk
E-mail(s) f.mendrzyk@dkfz.de
Phone 49-6221-424676
Organization name German Cancer Research Center (DKFZ)
Street address
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL2920
Series (1)
GSE3435 Human ependymomas.

Data table header descriptions
ID_REF
VALUE Raw log ratio (Cy5/Cy3).
CH1_RAW Raw median signal intensity in Cy5-channel (635nm).
CH1_MEAN Raw mean signal intensity in Cy5-channel (635nm).
CH1_SD Signal intensity standard deviation in Cy5-channel (635nm).
CH1_BKD_RAW Raw median background intensity in Cy5-channel (635nm).
CH1_BKD_MEAN Raw mean background intensity in Cy5-channel (635nm).
CH1_BKD_SD Background intensity standard deviation in Cy5-channel (635nm).
CH1_AREA Signal area in Cy5-channel (635nm).
CH1_BKD_AREA Background area in Cy5-channel (635nm).
CH2_RAW Raw median signal intensity in Cy3-channel (532nm).
CH2_MEAN Raw mean signal intensity in Cy3-channel (532nm).
CH2_SD Signal intensity standard deviation in Cy3-channel (532nm).
CH2_BKD_RAW Raw median background intensity in Cy3-channel (532nm).
CH2_BKD_MEAN Raw mean background intensity in Cy3-channel (532nm).
CH2_BKD_SD Background intensity standard deviation in Cy3-channel (532nm).
CH2_AREA Signal area in Cy3-channel (532nm).
CH2_BKD_AREA Background area in Cy3-channel (532nm).

Data table
ID_REF VALUE CH1_RAW CH1_MEAN CH1_SD CH1_BKD_RAW CH1_BKD_MEAN CH1_BKD_SD CH1_AREA CH1_BKD_AREA CH2_RAW CH2_MEAN CH2_SD CH2_BKD_RAW CH2_BKD_MEAN CH2_BKD_SD CH2_AREA CH2_BKD_AREA
G000001-1 0.42 2694 2520 1024 296 318 173 52 340 1937 1842 718 145 150 52 52 340
G000001-2 0.466 2353 2136 954 278 292 118 52 340 1645 1588 639 143 145 43 52 340
G000001-3 0.394 2691 2678 619 251 269 103 32 236 1993 2007 419 136 144 58 32 236
G000002-1 0.226 13956 13430 3526 380 402 162 52 340 11792 11683 2241 184 206 122 52 340
G000002-2 0.129 13297 13422 2397 361 378 131 52 340 12006 11561 2314 174 185 64 52 340
G000002-3 -0.004 11232 10985 2152 320 339 138 52 340 11121 10956 2123 175 186 81 52 340
G000003-1 0.246 7582 6982 2751 406 420 139 52 340 6252 6205 1787 201 209 62 52 340
G000003-2 0.155 7234 6778 2436 405 430 135 52 340 6327 5974 1811 194 208 76 52 340
G000003-3 0.17 7976 7797 2424 406 428 145 52 340 6929 6752 1803 199 209 81 52 340
G000004-1 0.264 16943 16272 3465 426 450 138 52 420 13962 12543 3951 211 229 101 52 420
G000004-2 0.296 16684 15557 4068 442 462 158 52 420 13443 12486 3404 211 221 71 52 420
G000004-3 0.25 16871 16265 3008 423 449 169 52 340 14037 13522 2601 204 225 115 52 340
G000005-1 0.393 22059 20782 4950 430 441 146 52 340 16708 15774 3049 236 244 84 52 340
G000005-2 0.425 20793 19282 5344 423 442 142 52 340 15394 14138 4655 219 231 82 52 340
G000005-3 0.333 19798 18319 5389 410 419 124 52 340 15597 13125 5260 207 213 59 52 340
G000006-1 0.225 13278 12992 2534 409 422 188 52 340 11210 11269 2261 203 226 196 52 340
G000006-2 0.179 12715 12143 3352 372 379 109 52 340 11099 10892 2188 197 204 64 52 340
G000006-3 -0.174 12647 12328 1977 353 356 114 52 340 14063 13684 2128 193 197 60 52 340
G000007-1 0.416 7710 7300 1789 318 343 177 52 420 5688 5484 1345 147 153 51 52 420
G000007-2 0.365 6678 6516 1454 315 336 331 52 406 5092 5150 1024 150 163 61 52 406

Total number of rows: 19395

Table truncated, full table size 1619 Kbytes.




Supplementary data files not provided

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