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Sample GSM77521 Query DataSets for GSM77521
Status Public on Apr 14, 2006
Title 2EP2
Sample type genomic
 
Channel 1
Source name Pooled reference DNA from either 4 healthy males or females of the opposite sex compared to the sample.
Organism Homo sapiens
Characteristics 635nm
Extracted molecule genomic DNA
Label Cy5
 
Channel 2
Source name Isolated tumor DNA, derived from ependymal tumors.
Organism Homo sapiens
Characteristics 532nm
Extracted molecule genomic DNA
Label Cy3
 
 
Description Comparison of normal versus tumor DNA (ependymoma). Whole-genome screening of DNA-copy number changes by array-based or matrix comparative genomic hybridization (matrix-CGH).
Data processing Genepix result files
 
Submission date Oct 11, 2005
Last update date Apr 13, 2006
Contact name Frank Mendrzyk
E-mail(s) f.mendrzyk@dkfz.de
Phone 49-6221-424676
Organization name German Cancer Research Center (DKFZ)
Street address
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL2920
Series (1)
GSE3435 Human ependymomas.

Data table header descriptions
ID_REF
VALUE Raw log ratio (Cy5/Cy3).
CH1_RAW Raw median signal intensity in Cy5-channel (635nm).
CH1_MEAN Raw mean signal intensity in Cy5-channel (635nm).
CH1_SD Signal intensity standard deviation in Cy5-channel (635nm).
CH1_BKD_RAW Raw median background intensity in Cy5-channel (635nm).
CH1_BKD_MEAN Raw mean background intensity in Cy5-channel (635nm).
CH1_BKD_SD Background intensity standard deviation in Cy5-channel (635nm).
CH1_AREA Signal area in Cy5-channel (635nm).
CH1_BKD_AREA Background area in Cy5-channel (635nm).
CH2_RAW Raw median signal intensity in Cy3-channel (532nm).
CH2_MEAN Raw mean signal intensity in Cy3-channel (532nm).
CH2_SD Signal intensity standard deviation in Cy3-channel (532nm).
CH2_BKD_RAW Raw median background intensity in Cy3-channel (532nm).
CH2_BKD_MEAN Raw mean background intensity in Cy3-channel (532nm).
CH2_BKD_SD Background intensity standard deviation in Cy3-channel (532nm).
CH2_AREA Signal area in Cy3-channel (532nm).
CH2_BKD_AREA Background area in Cy3-channel (532nm).

Data table
ID_REF VALUE CH1_RAW CH1_MEAN CH1_SD CH1_BKD_RAW CH1_BKD_MEAN CH1_BKD_SD CH1_AREA CH1_BKD_AREA CH2_RAW CH2_MEAN CH2_SD CH2_BKD_RAW CH2_BKD_MEAN CH2_BKD_SD CH2_AREA CH2_BKD_AREA
G000001-1 0.058 2041 1921 765 249 253 91 52 340 1853 1732 743 132 136 41 52 340
G000001-2 -0.105 2135 2152 752 236 248 92 52 340 2177 2015 674 135 139 38 52 340
G000001-3 0.193 2615 2546 832 247 258 96 52 340 2203 2060 685 132 134 38 52 340
G000002-1 -0.009 9798 9330 2732 290 298 90 52 420 9723 9283 2297 157 161 48 52 420
G000002-2 -0.031 9292 9245 2309 268 280 95 52 420 9378 8984 2561 156 162 48 52 420
G000002-3 -0.023 9375 9078 2110 281 293 112 52 340 9401 9256 2170 158 163 50 52 340
G000003-1 0.02 7066 6708 2043 327 359 153 52 340 6828 6403 1993 184 200 106 52 340
G000003-2 -0.079 5627 5572 1751 317 351 169 52 340 5801 5569 1669 193 219 190 52 340
G000003-3 -0.108 5626 5202 1765 287 318 192 52 340 5932 5692 2048 179 187 66 52 340
G000004-1 0.165 15760 14534 3766 416 429 141 52 420 13886 13153 2454 202 216 77 52 420
G000004-2 0.123 13465 12488 3459 366 379 112 52 420 12233 11782 2683 206 214 78 52 420
G000004-3 -0.276 10798 10103 2458 321 334 101 52 340 12878 12334 2656 188 195 55 52 340
G000005-1 0.394 19571 17455 5232 392 406 112 52 340 14809 13734 4283 214 224 71 52 340
G000005-2 0.172 19029 17209 5626 375 399 232 52 420 16761 14507 5434 201 229 194 52 420
G000005-3 -0.023 16425 14437 4648 354 392 264 52 420 16532 14499 4729 207 228 192 52 420
G000006-1 0.084 12064 11804 3644 394 407 175 52 420 11209 10804 3611 198 199 54 52 420
G000006-2 0.084 11890 10840 3099 365 383 143 52 420 11066 10094 2901 195 198 49 52 420
G000006-3 -0.267 8894 8302 2771 370 401 207 52 420 10457 9402 3626 201 283 783 52 420
G000007-1 0.062 5420 5073 1459 250 259 92 52 420 5088 4899 1221 134 139 42 52 420
G000007-2 0.053 5452 5330 1548 250 257 94 52 340 5152 4948 1206 137 139 44 52 340

Total number of rows: 19395

Table truncated, full table size 1589 Kbytes.




Supplementary data files not provided

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