NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM77523 Query DataSets for GSM77523
Status Public on Apr 14, 2006
Title 2EP4
Sample type genomic
 
Channel 1
Source name Pooled reference DNA from either 4 healthy males or females of the opposite sex compared to the sample.
Organism Homo sapiens
Characteristics 635nm
Extracted molecule genomic DNA
Label Cy5
 
Channel 2
Source name Isolated tumor DNA, derived from ependymal tumors.
Organism Homo sapiens
Characteristics 532nm
Extracted molecule genomic DNA
Label Cy3
 
 
Description Comparison of normal versus tumor DNA (ependymoma). Whole-genome screening of DNA-copy number changes by array-based or matrix comparative genomic hybridization (matrix-CGH).
Data processing Genepix result files
 
Submission date Oct 11, 2005
Last update date Apr 13, 2006
Contact name Frank Mendrzyk
E-mail(s) f.mendrzyk@dkfz.de
Phone 49-6221-424676
Organization name German Cancer Research Center (DKFZ)
Street address
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL2920
Series (1)
GSE3435 Human ependymomas.

Data table header descriptions
ID_REF
VALUE Raw log ratio (Cy5/Cy3).
CH1_RAW Raw median signal intensity in Cy5-channel (635nm).
CH1_MEAN Raw mean signal intensity in Cy5-channel (635nm).
CH1_SD Signal intensity standard deviation in Cy5-channel (635nm).
CH1_BKD_RAW Raw median background intensity in Cy5-channel (635nm).
CH1_BKD_MEAN Raw mean background intensity in Cy5-channel (635nm).
CH1_BKD_SD Background intensity standard deviation in Cy5-channel (635nm).
CH1_AREA Signal area in Cy5-channel (635nm).
CH1_BKD_AREA Background area in Cy5-channel (635nm).
CH2_RAW Raw median signal intensity in Cy3-channel (532nm).
CH2_MEAN Raw mean signal intensity in Cy3-channel (532nm).
CH2_SD Signal intensity standard deviation in Cy3-channel (532nm).
CH2_BKD_RAW Raw median background intensity in Cy3-channel (532nm).
CH2_BKD_MEAN Raw mean background intensity in Cy3-channel (532nm).
CH2_BKD_SD Background intensity standard deviation in Cy3-channel (532nm).
CH2_AREA Signal area in Cy3-channel (532nm).
CH2_BKD_AREA Background area in Cy3-channel (532nm).

Data table
ID_REF VALUE CH1_RAW CH1_MEAN CH1_SD CH1_BKD_RAW CH1_BKD_MEAN CH1_BKD_SD CH1_AREA CH1_BKD_AREA CH2_RAW CH2_MEAN CH2_SD CH2_BKD_RAW CH2_BKD_MEAN CH2_BKD_SD CH2_AREA CH2_BKD_AREA
G000001-1 -0.251 2205 2178 729 446 451 164 52 340 2284 2105 639 191 196 56 52 340
G000001-2 0.044 2921 2891 456 424 441 179 32 236 2610 2599 356 188 200 66 32 236
G000001-3 -0.07 3595 3591 639 541 558 184 32 236 3419 3317 662 213 220 73 32 236
G000002-1 -0.084 12198 11738 2878 471 484 157 52 414 12673 12352 2435 246 252 80 52 414
G000002-2 -0.059 12686 12079 2612 521 532 165 52 420 12924 12348 2304 253 260 84 52 420
G000002-3 -0.074 12661 11946 3101 513 519 161 52 420 13047 12258 2945 258 260 69 52 420
G000003-1 -0.041 7892 7624 1890 549 570 169 52 340 7826 7592 1694 273 279 72 52 340
G000003-2 -0.403 6977 6740 1767 583 612 187 52 340 8743 8290 2004 290 292 70 52 340
G000003-3 -0.116 7983 7504 1906 657 671 170 52 340 8223 7838 1752 286 293 78 52 340
G000004-1 -0.278 13564 13670 1717 540 556 163 52 420 16089 15969 2684 293 298 77 52 420
G000004-2 0.012 14491 14291 2354 580 610 294 52 420 14086 13800 2405 293 304 99 52 420
G000004-3 0.038 16103 14755 4403 642 658 204 52 420 15336 14709 3465 280 287 73 52 420
G000005-1 0.034 16434 15446 3761 562 586 189 52 340 15801 14892 3601 298 321 236 52 340
G000005-2 0.094 14769 13818 4352 582 626 231 52 420 13585 13289 3166 293 301 74 52 420
G000005-3 0.018 14302 13465 3483 644 649 184 52 340 13814 13152 3249 326 333 106 52 340
G000006-1 0.114 14488 13747 3027 561 581 174 52 420 13166 12211 3071 293 302 88 52 420
G000006-2 0.063 12322 11585 3082 554 597 289 52 340 11548 10884 2628 286 288 82 52 340
G000006-3 -0.212 11588 10966 2333 567 610 267 52 420 13051 12589 2458 284 295 82 52 420
G000007-1 -0.208 6444 6258 1531 274 288 124 52 420 7295 7131 1453 168 170 54 52 420
G000007-2 -0.083 6905 6852 1644 318 331 141 52 420 7153 6865 1512 175 179 61 52 420

Total number of rows: 19395

Table truncated, full table size 1635 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap