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Sample GSM77528 Query DataSets for GSM77528
Status Public on Apr 14, 2006
Title 2EP9
Sample type genomic
 
Channel 1
Source name Pooled reference DNA from either 4 healthy males or females of the opposite sex compared to the sample.
Organism Homo sapiens
Characteristics 635nm
Extracted molecule genomic DNA
Label Cy5
 
Channel 2
Source name Isolated tumor DNA, derived from ependymal tumors.
Organism Homo sapiens
Characteristics 532nm
Extracted molecule genomic DNA
Label Cy3
 
 
Description Comparison of normal versus tumor DNA (ependymoma). Whole-genome screening of DNA-copy number changes by array-based or matrix comparative genomic hybridization (matrix-CGH).
Data processing Genepix result files
 
Submission date Oct 11, 2005
Last update date Apr 13, 2006
Contact name Frank Mendrzyk
E-mail(s) f.mendrzyk@dkfz.de
Phone 49-6221-424676
Organization name German Cancer Research Center (DKFZ)
Street address
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL2920
Series (1)
GSE3435 Human ependymomas.

Data table header descriptions
ID_REF
VALUE Raw log ratio (Cy5/Cy3).
CH1_RAW Raw median signal intensity in Cy5-channel (635nm).
CH1_MEAN Raw mean signal intensity in Cy5-channel (635nm).
CH1_SD Signal intensity standard deviation in Cy5-channel (635nm).
CH1_BKD_RAW Raw median background intensity in Cy5-channel (635nm).
CH1_BKD_MEAN Raw mean background intensity in Cy5-channel (635nm).
CH1_BKD_SD Background intensity standard deviation in Cy5-channel (635nm).
CH1_AREA Signal area in Cy5-channel (635nm).
CH1_BKD_AREA Background area in Cy5-channel (635nm).
CH2_RAW Raw median signal intensity in Cy3-channel (532nm).
CH2_MEAN Raw mean signal intensity in Cy3-channel (532nm).
CH2_SD Signal intensity standard deviation in Cy3-channel (532nm).
CH2_BKD_RAW Raw median background intensity in Cy3-channel (532nm).
CH2_BKD_MEAN Raw mean background intensity in Cy3-channel (532nm).
CH2_BKD_SD Background intensity standard deviation in Cy3-channel (532nm).
CH2_AREA Signal area in Cy3-channel (532nm).
CH2_BKD_AREA Background area in Cy3-channel (532nm).

Data table
ID_REF VALUE CH1_RAW CH1_MEAN CH1_SD CH1_BKD_RAW CH1_BKD_MEAN CH1_BKD_SD CH1_AREA CH1_BKD_AREA CH2_RAW CH2_MEAN CH2_SD CH2_BKD_RAW CH2_BKD_MEAN CH2_BKD_SD CH2_AREA CH2_BKD_AREA
G000001-1 -0.044 3414 3392 646 444 460 152 32 236 3396 3318 667 334 336 80 32 236
G000001-2 -0.052 3417 3314 640 464 477 124 32 236 3389 3243 771 327 340 88 32 236
G000001-3 -0.052 3313 3262 757 476 476 128 32 236 3273 3124 696 331 341 91 32 236
G000002-1 0.071 16235 14452 4796 455 544 493 52 420 15338 13415 4714 316 333 124 52 420
G000002-2 0.109 15881 15112 3676 450 476 173 52 340 14631 13986 3256 320 325 78 52 340
G000002-3 0.075 15941 15042 3684 446 477 201 52 340 15036 13989 3814 329 338 87 52 340
G000003-1 0.22 9469 8272 2903 442 457 155 52 340 8077 7463 2832 329 331 74 52 340
G000003-2 0.191 9224 8399 3162 442 456 125 52 340 8011 7469 2664 319 326 85 52 340
G000003-3 0.165 9267 8786 2935 432 451 130 52 340 8194 7648 2613 313 322 80 52 340
G000004-1 0.101 18722 17253 4062 437 471 198 52 340 17362 15773 4082 313 331 114 52 340
G000004-2 0.093 20143 18138 4908 435 446 129 52 340 18808 17140 3874 326 333 100 52 340
G000004-3 0.07 19475 17945 3876 448 488 222 52 340 18440 16878 3676 319 330 91 52 340
G000005-1 0.165 18789 16939 6640 424 441 114 52 334 16684 14209 5454 303 308 74 52 334
G000005-2 0.26 19295 17501 6206 428 456 190 52 340 16068 14425 5370 312 322 103 52 340
G000005-3 0.279 20024 18235 4973 438 462 177 52 340 16454 15003 4082 310 317 92 52 340
G000006-1 0.109 13086 11860 5236 380 406 147 52 340 12063 11047 4795 281 290 87 52 340
G000006-2 0.035 13486 12446 5244 384 403 131 52 340 13058 11470 4489 271 281 90 52 340
G000006-3 0.06 12858 12320 5362 394 427 202 52 420 12240 11405 4611 284 296 89 52 420
G000007-1 0.088 10819 9870 2978 470 486 150 52 420 10053 9250 2525 314 322 75 52 420
G000007-2 0.036 10085 9603 2763 471 497 209 52 420 9710 8834 2898 335 341 81 52 420

Total number of rows: 19395

Table truncated, full table size 1623 Kbytes.




Supplementary data files not provided

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