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Sample GSM77534 Query DataSets for GSM77534
Status Public on Apr 14, 2006
Title 2EP15
Sample type genomic
 
Channel 1
Source name Pooled reference DNA from either 4 healthy males or females of the opposite sex compared to the sample.
Organism Homo sapiens
Characteristics 635nm
Extracted molecule genomic DNA
Label Cy5
 
Channel 2
Source name Isolated tumor DNA, derived from ependymal tumors.
Organism Homo sapiens
Characteristics 532nm
Extracted molecule genomic DNA
Label Cy3
 
 
Description Comparison of normal versus tumor DNA (ependymoma). Whole-genome screening of DNA-copy number changes by array-based or matrix comparative genomic hybridization (matrix-CGH).
Data processing Genepix result files
 
Submission date Oct 11, 2005
Last update date Apr 13, 2006
Contact name Frank Mendrzyk
E-mail(s) f.mendrzyk@dkfz.de
Phone 49-6221-424676
Organization name German Cancer Research Center (DKFZ)
Street address
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL2920
Series (1)
GSE3435 Human ependymomas.

Data table header descriptions
ID_REF
VALUE Raw log ratio (Cy5/Cy3).
CH1_RAW Raw median signal intensity in Cy5-channel (635nm).
CH1_MEAN Raw mean signal intensity in Cy5-channel (635nm).
CH1_SD Signal intensity standard deviation in Cy5-channel (635nm).
CH1_BKD_RAW Raw median background intensity in Cy5-channel (635nm).
CH1_BKD_MEAN Raw mean background intensity in Cy5-channel (635nm).
CH1_BKD_SD Background intensity standard deviation in Cy5-channel (635nm).
CH1_AREA Signal area in Cy5-channel (635nm).
CH1_BKD_AREA Background area in Cy5-channel (635nm).
CH2_RAW Raw median signal intensity in Cy3-channel (532nm).
CH2_MEAN Raw mean signal intensity in Cy3-channel (532nm).
CH2_SD Signal intensity standard deviation in Cy3-channel (532nm).
CH2_BKD_RAW Raw median background intensity in Cy3-channel (532nm).
CH2_BKD_MEAN Raw mean background intensity in Cy3-channel (532nm).
CH2_BKD_SD Background intensity standard deviation in Cy3-channel (532nm).
CH2_AREA Signal area in Cy3-channel (532nm).
CH2_BKD_AREA Background area in Cy3-channel (532nm).

Data table
ID_REF VALUE CH1_RAW CH1_MEAN CH1_SD CH1_BKD_RAW CH1_BKD_MEAN CH1_BKD_SD CH1_AREA CH1_BKD_AREA CH2_RAW CH2_MEAN CH2_SD CH2_BKD_RAW CH2_BKD_MEAN CH2_BKD_SD CH2_AREA CH2_BKD_AREA
G000001-1 0.157 2266 2356 926 434 455 134 80 526 1972 1908 802 329 338 97 80 526
G000001-2 0.486 2257 2180 985 448 459 129 52 420 1624 1700 809 332 342 99 52 420
G000001-3 0.426 2017 2170 858 449 466 134 80 547 1511 1785 1089 344 355 104 80 547
G000002-1 0.126 15361 14894 3870 400 420 163 52 420 14013 13723 3418 306 359 303 52 420
G000002-2 0.12 15423 14988 2940 410 428 167 52 420 14127 13751 3048 309 331 186 52 420
G000002-3 0.184 14639 14268 2856 389 403 122 52 420 12859 12637 3197 319 334 138 52 420
G000003-1 413 426 121 401 421 141 120 717 310 319 91 319 333 133 120 717
G000003-2 418 438 129 414 427 136 120 696 325 332 88 333 347 120 120 696
G000003-3 0 436 448 134 427 443 140 120 762 342 343 87 333 347 113 120 762
G000004-1 -0.014 14592 14851 3185 363 389 141 52 340 14665 14300 3118 295 315 146 52 340
G000004-2 0.154 13265 13223 3966 378 405 164 52 420 11883 12889 4053 300 321 127 52 420
G000004-3 0.106 14940 14391 3230 380 389 121 52 340 13846 13049 3865 314 317 89 52 340
G000005-1 0.041 17570 17855 3630 326 344 130 52 340 17066 16951 3586 300 310 93 52 340
G000005-2 0.002 18054 18207 4636 322 335 110 52 420 17991 17398 4444 282 291 92 52 420
G000005-3 0.141 17772 17117 3480 341 353 117 52 420 16102 15639 4010 294 305 108 52 420
G000006-1 -0.131 15086 14109 4007 310 318 113 120 663 16465 15455 4470 290 299 100 120 663
G000006-2 -0.158 12637 12604 4523 309 323 113 120 658 14045 13566 4606 288 296 100 120 658
G000006-3 -0.003 14131 13951 4282 325 342 132 120 710 14112 13972 4680 281 296 138 120 710
G000007-1 0.208 10902 9427 4021 427 436 119 80 526 9397 8119 3191 329 335 100 80 526
G000007-2 0.29 12632 12223 2628 417 435 151 52 414 10301 9813 2098 313 327 100 52 414

Total number of rows: 19395

Table truncated, full table size 1624 Kbytes.




Supplementary data files not provided

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