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Sample GSM77541 Query DataSets for GSM77541
Status Public on Apr 14, 2006
Title 2EP22
Sample type genomic
 
Channel 1
Source name Pooled reference DNA from either 4 healthy males or females of the opposite sex compared to the sample.
Organism Homo sapiens
Characteristics 635nm
Extracted molecule genomic DNA
Label Cy5
 
Channel 2
Source name Isolated tumor DNA, derived from ependymal tumors.
Organism Homo sapiens
Characteristics 532nm
Extracted molecule genomic DNA
Label Cy3
 
 
Description Comparison of normal versus tumor DNA (ependymoma). Whole-genome screening of DNA-copy number changes by array-based or matrix comparative genomic hybridization (matrix-CGH).
Data processing Genepix result files
 
Submission date Oct 11, 2005
Last update date Apr 13, 2006
Contact name Frank Mendrzyk
E-mail(s) f.mendrzyk@dkfz.de
Phone 49-6221-424676
Organization name German Cancer Research Center (DKFZ)
Street address
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL2920
Series (1)
GSE3435 Human ependymomas.

Data table header descriptions
ID_REF
VALUE Raw log ratio (Cy5/Cy3).
CH1_RAW Raw median signal intensity in Cy5-channel (635nm).
CH1_MEAN Raw mean signal intensity in Cy5-channel (635nm).
CH1_SD Signal intensity standard deviation in Cy5-channel (635nm).
CH1_BKD_RAW Raw median background intensity in Cy5-channel (635nm).
CH1_BKD_MEAN Raw mean background intensity in Cy5-channel (635nm).
CH1_BKD_SD Background intensity standard deviation in Cy5-channel (635nm).
CH1_AREA Signal area in Cy5-channel (635nm).
CH1_BKD_AREA Background area in Cy5-channel (635nm).
CH2_RAW Raw median signal intensity in Cy3-channel (532nm).
CH2_MEAN Raw mean signal intensity in Cy3-channel (532nm).
CH2_SD Signal intensity standard deviation in Cy3-channel (532nm).
CH2_BKD_RAW Raw median background intensity in Cy3-channel (532nm).
CH2_BKD_MEAN Raw mean background intensity in Cy3-channel (532nm).
CH2_BKD_SD Background intensity standard deviation in Cy3-channel (532nm).
CH2_AREA Signal area in Cy3-channel (532nm).
CH2_BKD_AREA Background area in Cy3-channel (532nm).

Data table
ID_REF VALUE CH1_RAW CH1_MEAN CH1_SD CH1_BKD_RAW CH1_BKD_MEAN CH1_BKD_SD CH1_AREA CH1_BKD_AREA CH2_RAW CH2_MEAN CH2_SD CH2_BKD_RAW CH2_BKD_MEAN CH2_BKD_SD CH2_AREA CH2_BKD_AREA
G000001-1 0.084 2339 2177 923 327 334 111 52 420 2122 1975 908 224 230 72 52 420
G000001-2 -0.087 2130 2164 1171 323 331 109 52 340 2157 2103 1103 238 246 75 52 340
G000001-3 -0.089 2063 2272 1307 331 343 116 52 420 2094 2099 1205 252 259 81 52 420
G000002-1 0.055 9246 9130 1896 303 315 102 52 420 8855 8853 1793 248 261 83 52 420
G000002-2 -0.071 9708 8863 2329 315 348 214 52 420 10126 9867 2374 259 356 666 52 420
G000002-3 -0.115 9647 9290 1988 305 315 110 52 420 10389 10145 1876 271 288 152 52 420
G000003-1 0.087 5788 5674 1412 310 324 112 52 340 5451 5557 1307 294 301 86 52 340
G000003-2 -0.078 5364 5456 1401 305 317 103 52 340 5603 5447 1702 262 269 79 52 340
G000003-3 -0.047 6156 6041 1417 316 318 106 52 340 6278 6076 1247 244 249 79 52 340
G000004-1 -0.046 8234 8417 1549 284 289 92 52 340 8460 8827 1446 253 281 347 52 340
G000004-2 -0.071 8290 8173 1357 288 295 90 52 340 8661 8468 1596 253 260 76 52 340
G000004-3 -0.05 8151 7971 2153 279 290 96 52 420 8412 8097 2550 263 265 79 52 420
G000005-1 0.161 9533 9312 2089 276 286 94 52 340 8527 8440 2206 245 251 80 52 340
G000005-2 0.14 9261 8831 2677 287 295 108 52 420 8394 8182 2550 248 252 81 52 420
G000005-3 0.148 8921 8887 2111 285 292 99 52 420 8045 8393 1867 249 255 76 52 420
G000006-1 -0.061 11551 11423 1641 293 301 103 120 758 11990 11860 1760 246 252 82 120 758
G000006-2 -0.023 11681 11225 1636 305 317 115 120 710 11807 11563 1349 245 249 82 120 710
G000006-3 0.003 11625 11247 2057 311 320 107 120 600 11545 11471 2200 253 262 87 120 600
G000007-1 0.058 8398 8113 1878 429 579 894 52 340 7906 7651 2168 250 282 245 52 340
G000007-2 0.172 7428 5963 3412 470 1161 3661 80 541 6442 5234 3398 267 434 1244 80 541

Total number of rows: 19395

Table truncated, full table size 1586 Kbytes.




Supplementary data files not provided

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