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Sample GSM77547 Query DataSets for GSM77547
Status Public on Apr 14, 2006
Title 2EP28
Sample type genomic
 
Channel 1
Source name Pooled reference DNA from either 4 healthy males or females of the opposite sex compared to the sample.
Organism Homo sapiens
Characteristics 635nm
Extracted molecule genomic DNA
Label Cy5
 
Channel 2
Source name Isolated tumor DNA, derived from ependymal tumors.
Organism Homo sapiens
Characteristics 532nm
Extracted molecule genomic DNA
Label Cy3
 
 
Description Comparison of normal versus tumor DNA (ependymoma). Whole-genome screening of DNA-copy number changes by array-based or matrix comparative genomic hybridization (matrix-CGH).
Data processing Genepix result files
 
Submission date Oct 11, 2005
Last update date Apr 13, 2006
Contact name Frank Mendrzyk
E-mail(s) f.mendrzyk@dkfz.de
Phone 49-6221-424676
Organization name German Cancer Research Center (DKFZ)
Street address
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL2920
Series (1)
GSE3435 Human ependymomas.

Data table header descriptions
ID_REF
VALUE Raw log ratio (Cy5/Cy3).
CH1_RAW Raw median signal intensity in Cy5-channel (635nm).
CH1_MEAN Raw mean signal intensity in Cy5-channel (635nm).
CH1_SD Signal intensity standard deviation in Cy5-channel (635nm).
CH1_BKD_RAW Raw median background intensity in Cy5-channel (635nm).
CH1_BKD_MEAN Raw mean background intensity in Cy5-channel (635nm).
CH1_BKD_SD Background intensity standard deviation in Cy5-channel (635nm).
CH1_AREA Signal area in Cy5-channel (635nm).
CH1_BKD_AREA Background area in Cy5-channel (635nm).
CH2_RAW Raw median signal intensity in Cy3-channel (532nm).
CH2_MEAN Raw mean signal intensity in Cy3-channel (532nm).
CH2_SD Signal intensity standard deviation in Cy3-channel (532nm).
CH2_BKD_RAW Raw median background intensity in Cy3-channel (532nm).
CH2_BKD_MEAN Raw mean background intensity in Cy3-channel (532nm).
CH2_BKD_SD Background intensity standard deviation in Cy3-channel (532nm).
CH2_AREA Signal area in Cy3-channel (532nm).
CH2_BKD_AREA Background area in Cy3-channel (532nm).

Data table
ID_REF VALUE CH1_RAW CH1_MEAN CH1_SD CH1_BKD_RAW CH1_BKD_MEAN CH1_BKD_SD CH1_AREA CH1_BKD_AREA CH2_RAW CH2_MEAN CH2_SD CH2_BKD_RAW CH2_BKD_MEAN CH2_BKD_SD CH2_AREA CH2_BKD_AREA
G000001-1 0.317 1509 1862 1273 420 430 134 80 508 1225 1521 899 351 357 100 80 508
G000001-2 0.096 1421 1655 1004 444 498 453 80 508 1283 1447 813 369 384 132 80 508
G000001-3 0.437 1477 1672 1011 462 577 1077 80 522 1143 1374 867 393 510 1462 80 522
G000002-1 0.232 14485 14453 3091 418 436 163 52 408 12295 12406 3261 318 344 152 52 408
G000002-2 0.215 16131 15572 2788 423 427 135 52 340 13856 13560 2463 323 344 134 52 340
G000002-3 0.225 16505 15371 3771 431 442 135 52 414 14077 13059 3378 321 331 108 52 414
G000003-1 0.585 411 423 124 402 423 186 120 709 329 327 101 323 342 140 120 709
G000003-2 0.922 451 451 126 415 438 205 120 696 341 343 93 322 346 174 120 696
G000003-3 0.503 417 443 129 434 528 619 120 762 333 343 100 345 462 1058 120 762
G000004-1 0.182 13608 13323 3814 373 387 131 52 414 11949 12063 3313 281 301 116 52 414
G000004-2 0.135 16213 15629 3512 358 388 179 52 340 14729 14291 3247 294 296 87 52 340
G000004-3 0.074 14073 13271 3674 376 418 326 52 420 13310 11872 4580 300 375 958 52 420
G000005-1 0.265 17909 17753 4751 299 306 105 52 420 14905 14827 4869 255 267 104 52 420
G000005-2 0.252 21014 20641 3216 313 328 119 52 340 17640 17629 2677 262 270 97 52 340
G000005-3 0.271 19917 19523 4665 315 328 149 52 420 16506 17043 3622 259 276 103 52 420
G000006-1 0.114 16795 15878 5037 304 318 125 120 661 15500 15190 4862 260 273 104 120 661
G000006-2 0.187 14338 13939 5203 290 306 118 120 649 12595 13320 4523 256 279 200 120 649
G000006-3 0.087 19584 19624 2873 294 311 151 80 588 18423 18108 3832 260 305 463 80 588
G000007-1 0.367 12587 12156 1907 408 411 126 52 420 9777 9690 2011 332 340 92 52 420
G000007-2 0.331 12427 11737 2707 401 420 140 52 414 9904 9477 2469 342 357 97 52 414

Total number of rows: 19395

Table truncated, full table size 1619 Kbytes.




Supplementary data files not provided

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