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Sample GSM77551 Query DataSets for GSM77551
Status Public on Apr 14, 2006
Title 2EP32
Sample type genomic
 
Channel 1
Source name Pooled reference DNA from either 4 healthy males or females of the opposite sex compared to the sample.
Organism Homo sapiens
Characteristics 635nm
Extracted molecule genomic DNA
Label Cy5
 
Channel 2
Source name Isolated tumor DNA, derived from ependymal tumors.
Organism Homo sapiens
Characteristics 532nm
Extracted molecule genomic DNA
Label Cy3
 
 
Description Comparison of normal versus tumor DNA (ependymoma). Whole-genome screening of DNA-copy number changes by array-based or matrix comparative genomic hybridization (matrix-CGH).
Data processing Genepix result files
 
Submission date Oct 11, 2005
Last update date Apr 13, 2006
Contact name Frank Mendrzyk
E-mail(s) f.mendrzyk@dkfz.de
Phone 49-6221-424676
Organization name German Cancer Research Center (DKFZ)
Street address
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL2920
Series (1)
GSE3435 Human ependymomas.

Data table header descriptions
ID_REF
VALUE Raw log ratio (Cy5/Cy3).
CH1_RAW Raw median signal intensity in Cy5-channel (635nm).
CH1_MEAN Raw mean signal intensity in Cy5-channel (635nm).
CH1_SD Signal intensity standard deviation in Cy5-channel (635nm).
CH1_BKD_RAW Raw median background intensity in Cy5-channel (635nm).
CH1_BKD_MEAN Raw mean background intensity in Cy5-channel (635nm).
CH1_BKD_SD Background intensity standard deviation in Cy5-channel (635nm).
CH1_AREA Signal area in Cy5-channel (635nm).
CH1_BKD_AREA Background area in Cy5-channel (635nm).
CH2_RAW Raw median signal intensity in Cy3-channel (532nm).
CH2_MEAN Raw mean signal intensity in Cy3-channel (532nm).
CH2_SD Signal intensity standard deviation in Cy3-channel (532nm).
CH2_BKD_RAW Raw median background intensity in Cy3-channel (532nm).
CH2_BKD_MEAN Raw mean background intensity in Cy3-channel (532nm).
CH2_BKD_SD Background intensity standard deviation in Cy3-channel (532nm).
CH2_AREA Signal area in Cy3-channel (532nm).
CH2_BKD_AREA Background area in Cy3-channel (532nm).

Data table
ID_REF VALUE CH1_RAW CH1_MEAN CH1_SD CH1_BKD_RAW CH1_BKD_MEAN CH1_BKD_SD CH1_AREA CH1_BKD_AREA CH2_RAW CH2_MEAN CH2_SD CH2_BKD_RAW CH2_BKD_MEAN CH2_BKD_SD CH2_AREA CH2_BKD_AREA
G000001-1 0.086 3498 3420 1590 426 1150 2924 80 592 3136 3045 1456 242 415 989 80 592
G000001-2 0.026 3481 3499 854 378 495 551 52 420 3269 3410 729 222 237 115 52 420
G000001-3 0.436 2239 2343 1774 461 816 1383 120 860 1560 1868 1405 246 313 364 120 860
G000002-1 0.007 11271 11053 1974 338 348 102 52 420 11098 10738 1851 216 222 61 52 420
G000002-2 0.038 11879 10856 2703 330 342 106 52 420 11467 10299 2917 215 219 62 52 420
G000002-3 0.065 11512 10965 1924 335 344 108 52 420 10910 10731 1571 225 223 61 52 420
G000003-1 0.131 8224 8056 1327 356 362 105 52 340 7403 7398 1248 220 222 61 52 340
G000003-2 0.037 8013 7628 1695 331 344 102 52 420 7710 7290 1444 221 225 54 52 420
G000003-3 0.105 8178 7722 2057 336 350 108 52 420 7516 7139 2031 225 229 58 52 420
G000004-1 0.114 9945 9772 2149 306 320 107 52 414 9116 8733 2254 207 210 57 52 414
G000004-2 0 9734 9352 1647 302 313 99 52 420 9639 9186 1883 208 212 59 52 420
G000004-3 -0.112 9711 9132 2092 299 303 88 52 340 10385 9946 2132 215 221 59 52 340
G000005-1 0.071 10250 10123 2274 302 311 95 52 406 9683 9563 2441 210 209 60 52 406
G000005-2 -0.079 7848 7683 1213 298 305 91 52 414 8181 7978 1275 205 207 59 52 414
G000005-3 0.069 9576 8634 2461 304 315 111 52 420 9049 8720 1836 212 209 55 52 420
G000006-1 0.074 10448 9124 5001 304 316 112 80 505 9855 8413 4823 219 226 67 80 505
G000006-2 0.067 11688 11113 2191 302 308 92 52 420 11087 10166 2684 214 218 57 52 420
G000006-3 -0.125 10343 9859 2406 301 310 95 52 420 11171 10581 3135 220 224 57 52 420
G000007-1 0.286 8339 7944 5673 448 896 1807 120 684 6714 6460 4961 244 338 519 120 684
G000007-2 0.077 8434 7103 3225 371 487 522 80 534 7869 6479 2987 227 244 155 80 534

Total number of rows: 19395

Table truncated, full table size 1586 Kbytes.




Supplementary data files not provided

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