|
| Status |
Public on Sep 07, 2023 |
| Title |
ChIA-PET from embryonic stem cell (ENCLB848JLS) |
| Sample type |
SRA |
| |
|
| Source name |
Mus musculus strain B6CASTF1/J male embryo embryonic stem primary cell
|
| Organism |
Mus musculus |
| Characteristics |
antibody: CTCF
cell_type: embryonic stem cell
biomaterial_type: primary cell
biosample encode accession: ENCBS665NEM (SAMN37186646)
collection date: not applicable
geographic location: not applicable
encode accession: ENCBS665NEM
Sex: male
dev stage: embryonic
age: unknown
donor_id: ENCDO509HIY
lab: Charles Lee
source: The Jackson Laboratory
link: ENCBS665NEM at ENCODE; https://www.encodeproject.org/ENCBS665NEM/
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
general protocol: https://www.encodeproject.org/documents/f7779792-9403-4396-9ff6-8e859edd608c/@@download/attachment/In-situ%20chiapet_Ruan%20Lab_final.pdf
|
| |
|
| Library strategy |
ChIA-PET |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
https://www.encodeproject.org/experiments/ENCSR466YGP/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIA-PET in B6CASTF1J
experiment encode accession: ENCSR466YGP
assay title: ChIA-PET
assembly: mm10
encode release date: 2022-01-21
lab: Charles Lee
library encode accession: ENCLB848JLS
fragmentation methods: sonication (Branson Sonifier 250)
size range: 350-600
|
| Data processing |
See GSM*_README.txt supplementary file linked below
|
| |
|
| Submission date |
Sep 07, 2023 |
| Last update date |
Sep 09, 2023 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL24247 |
| Series (1) |
| GSE242635 |
ChIA-PET from embryonic stem cell (ENCSR466YGP) |
|
| Relations |
| BioSample |
SAMN37186646 |
| SRA |
SRX21675669 |
