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Sample GSM7766458 Query DataSets for GSM7766458
Status Public on Sep 07, 2023
Title ChIA-PET from embryonic stem cell (ENCLB023MOI)
Sample type SRA
 
Source name Mus musculus strain C57BL/6J male embryo embryonic stem primary cell
Organism Mus musculus
Characteristics antibody: CTCF
cell_type: embryonic stem cell
biomaterial_type: primary cell
biosample encode accession: ENCBS016RGR (SAMN37186639)
collection date: not applicable
geographic location: not applicable
encode accession: ENCBS016RGR
Sex: male
dev stage: embryonic
age: unknown
donor_id: ENCDO072AAA
lab: Charles Lee
source: The Jackson Laboratory
link: ENCBS016RGR at ENCODE; https://www.encodeproject.org/ENCBS016RGR/
Extracted molecule genomic DNA
Extraction protocol general protocol: https://www.encodeproject.org/documents/f7779792-9403-4396-9ff6-8e859edd608c/@@download/attachment/In-situ%20chiapet_Ruan%20Lab_final.pdf
 
Library strategy ChIA-PET
Library source genomic
Library selection ChIP
Instrument model Illumina MiSeq
 
Description https://www.encodeproject.org/experiments/ENCSR179IQN/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIA-PET in C57BL6J
experiment encode accession: ENCSR179IQN
assay title: ChIA-PET
assembly: mm10
encode release date: 2022-01-21
lab: Charles Lee
library encode accession: ENCLB023MOI
fragmentation methods: sonication (Branson Sonifier 250)
size range: 300-600
instrument models: Illumina MiSeq,Illumina NovaSeq 6000
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Sep 07, 2023
Last update date Sep 09, 2023
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL16417
Series (1)
GSE242649 ChIA-PET from embryonic stem cell (ENCSR179IQN)
Relations
BioSample SAMN37186639
SRA SRX21675685

Supplementary file Size Download File type/resource
GSM7766458_ENCFF207GYP_signal_of_unique_reads_mm10.bed.gz 802.1 Mb (ftp)(http) BED
GSM7766458_ENCFF316BRL_peaks_mm10.bigBed 14.1 Mb (ftp)(http) BIGBED
GSM7766458_ENCFF540HIM_loops_mm10.bedpe.gz 3.4 Mb (ftp)(http) BEDPE
GSM7766458_ENCFF625RVT_peaks_mm10.bed.gz 7.5 Mb (ftp)(http) BED
GSM7766458_ENCFF714QHO_loops_mm10.bigInteract 5.5 Mb (ftp)(http) BIGINTERACT
GSM7766458_ENCFF719FBI_contact_matrix_mm10.hic.gz 264.8 Mb (ftp)(http) HIC
GSM7766458_ENCFF739EWM_signal_of_unique_reads_mm10.bigWig 721.3 Mb (ftp)(http) BIGWIG
GSM7766458_ENCLB023MOI_README.txt.gz 923 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA

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