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Sample GSM7770924 Query DataSets for GSM7770924
Status Public on Nov 01, 2023
Title Ciaplatin, mRNA1
Sample type SRA
 
Source name Kidney
Organism Mus musculus
Characteristics tissue: Kidney
genotype: cisplatin induced CKD
Extracted molecule total RNA
Extraction protocol Total RNAs were extracted and then cleaned up with a quick RNA microprep kit (Zymo Research).
Library was constructed using QIAseq Stranded RNA Lib Kit
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
 
Data processing The adapter sequences in the raw data were trimmed using Cutadapt, and STAR was utilized for aligning paired-end (for total RNA) or single-end (for small RNA and Clipseq) sequences to the mouse genome (mm39) and quantification.
Assembly: mm39
Supplementary files format and content: tab delimited file for gene counts
 
Submission date Sep 09, 2023
Last update date Nov 01, 2023
Contact name Sang-Ho Kwon
E-mail(s) kkwon@augusta.edu
Phone 706-721-0379
Organization name Augusta Univeristy
Department Cellular Biology and Anatomy
Street address 1120 15th Street
City Augusta
State/province Georgia
ZIP/Postal code 30912
Country USA
 
Platform ID GPL19057
Series (2)
GSE242808 MicroRNA-mediated attenuation of branched-chain amino acid catabolism promotes ferroptosis in chronic kidney disease [RNA-seq]
GSE242809 MicroRNA-mediated attenuation of branched-chain amino acid catabolism promotes ferroptosis in chronic kidney disease.
Relations
BioSample SAMN37341350
SRA SRX21712067

Supplementary file Size Download File type/resource
GSM7770924_KK47_cis_S4_alignedReadsPerGene.out.tab.gz 345.0 Kb (ftp)(http) TAB
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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