|
| Status |
Public on Feb 26, 2024 |
| Title |
gDNA_20_AEH [GY249UU2] |
| Sample type |
genomic |
| |
|
| Source name |
AEH
|
| Organism |
Homo sapiens |
| Characteristics |
gender: Female
anatomical site: Uterus
tissue: AEH
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was extracted using the QIAamp DNA Micro Kit (Qiagen), according to the manufacturer’s instructions.
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
Standard Illumina Protocol
|
| Scan protocol |
Arrays were imaged using iScan System using standard recommended Illumina scanner setting.
|
| Description |
GY249UU2
|
| Data processing |
The minfi package in R/Bioconductor
The GA_illumina_methylation_EEA_Atypia_v1_processed.txt contains normalized Average Beta (background subtraction and control normalization)
The GA_illumina_methylation_EEA_Atypia_v1_signal_intensities.txt contains unmethylated and methylated signal intensities
|
| |
|
| Submission date |
Sep 15, 2023 |
| Last update date |
Feb 26, 2024 |
| Contact name |
Osamu Gotoh |
| Organization name |
Japanese Foundation For Cancer Research
|
| Street address |
Ariake 3-8-31
|
| City |
Koto-ku |
| State/province |
Tokyo |
| ZIP/Postal code |
135-8550 |
| Country |
Japan |
| |
|
| Platform ID |
GPL21145 |
| Series (1) |
| GSE243303 |
Epigenome analysis of precursor lesions of endometrial endometrioid carcinoma. |
|
