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| Status |
Public on Sep 22, 2023 |
| Title |
MY16_sRNA_R1 |
| Sample type |
SRA |
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| Source name |
Whole worm
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| Organism |
Caenorhabditis elegans |
| Characteristics |
tissue: Whole worm
isolate: MY16
fraction: small RNA
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| Growth protocol |
20C fed on E.coli OP-50 bacteria
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| Extracted molecule |
total RNA |
| Extraction protocol |
TRIzol®
NEBNext® Small RNA Library Prep Set for Illumina®
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| Library strategy |
ncRNA-Seq |
| Library source |
transcriptomic |
| Library selection |
size fractionation |
| Instrument model |
Illumina NextSeq 500 |
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| Description |
count_table_sRNA_AS.csv
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| Data processing |
Adapter trimming - cutadapt
Quality examination - fastQC
Alignment - Shortstack (small RNA), Bowtie2 (mRNA)
Counting - HTseq_count
Comparisons - DESeq2
Assembly: WS235/ce11
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| Submission date |
Sep 18, 2023 |
| Last update date |
Sep 22, 2023 |
| Contact name |
Hila Gingold |
| Organization name |
Tel-Aviv University
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| Street address |
30 Haim Levanon Street
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| City |
Tel Aviv |
| ZIP/Postal code |
6997801 |
| Country |
Israel |
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| Platform ID |
GPL19757 |
| Series (1) |
| GSE243434 |
Nucleus-Independent Transgenerational Small RNA Inheritance in Caenorhabditis elegans |
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| Relations |
| BioSample |
SAMN37445767 |
| SRA |
SRX21813682 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
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