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Status |
Public on Sep 22, 2023 |
Title |
MY16_sRNA_R2 |
Sample type |
SRA |
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Source name |
Whole worm
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Organism |
Caenorhabditis elegans |
Characteristics |
tissue: Whole worm isolate: MY16 fraction: small RNA
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Growth protocol |
20C fed on E.coli OP-50 bacteria
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Extracted molecule |
total RNA |
Extraction protocol |
TRIzol® NEBNext® Small RNA Library Prep Set for Illumina®
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Library strategy |
ncRNA-Seq |
Library source |
transcriptomic |
Library selection |
size fractionation |
Instrument model |
Illumina NextSeq 500 |
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Description |
count_table_sRNA_AS.csv
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Data processing |
Adapter trimming - cutadapt Quality examination - fastQC Alignment - Shortstack (small RNA), Bowtie2 (mRNA) Counting - HTseq_count Comparisons - DESeq2 Assembly: WS235/ce11
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Submission date |
Sep 18, 2023 |
Last update date |
Sep 22, 2023 |
Contact name |
Hila Gingold |
Organization name |
Tel-Aviv University
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Street address |
30 Haim Levanon Street
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City |
Tel Aviv |
ZIP/Postal code |
6997801 |
Country |
Israel |
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Platform ID |
GPL19757 |
Series (1) |
GSE243434 |
Nucleus-Independent Transgenerational Small RNA Inheritance in Caenorhabditis elegans |
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Relations |
BioSample |
SAMN37445766 |
SRA |
SRX21813683 |
Supplementary data files not provided |
SRA Run Selector |
Raw data are available in SRA |
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