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Sample GSM7785582 Query DataSets for GSM7785582
Status Public on Sep 22, 2023
Title N2_sRNA_R1
Sample type SRA
 
Source name Whole worm
Organism Caenorhabditis elegans
Characteristics tissue: Whole worm
isolate: N2
fraction: small RNA
Growth protocol 20C fed on E.coli OP-50 bacteria
Extracted molecule total RNA
Extraction protocol TRIzol®
NEBNext® Small RNA Library Prep Set for Illumina®
 
Library strategy ncRNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina NextSeq 500
 
Description count_table_sRNA_AS.csv
Data processing Adapter trimming - cutadapt
Quality examination - fastQC
Alignment - Shortstack (small RNA), Bowtie2 (mRNA)
Counting - HTseq_count
Comparisons - DESeq2
Assembly: WS235/ce11
 
Submission date Sep 18, 2023
Last update date Sep 22, 2023
Contact name Hila Gingold
Organization name Tel-Aviv University
Street address 30 Haim Levanon Street
City Tel Aviv
ZIP/Postal code 6997801
Country Israel
 
Platform ID GPL19757
Series (1)
GSE243434 Nucleus-Independent Transgenerational Small RNA Inheritance in Caenorhabditis elegans
Relations
BioSample SAMN37445761
SRA SRX21813688

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA

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