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Sample GSM7795502 Query DataSets for GSM7795502
Status Public on Apr 22, 2024
Title genomic DNA from FFPE material of MB patient biopsy 7
Sample type genomic
 
Source name FFPE material of MB patient biopsy 7
Organism Homo sapiens
Characteristics gender: Male
proteome subtype: G4
main molecular subgroup: GR4
Extracted molecule genomic DNA
Extraction protocol 100 - 250 ng DNAgenomic DNA was extracted and purified using Illumina FFPE Restore Kit
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation850K/EPIC Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description GR4 sample
Data processing Raw idats files were processed further in Rstudio (version 4.3.0) using minfi package
 
Submission date Sep 21, 2023
Last update date Apr 22, 2024
Contact name Julia Elisabeth Neumann
Organization name University Hospital Hamburg Eppendorf
Department ZMNH
Street address Martinistrasse 52
City Hamburg
ZIP/Postal code 20251
Country Germany
 
Platform ID GPL23976
Series (2)
GSE243768 Multiomic profiling of medulloblastoma reveals subtype-specific targetable alterations at the proteome and N-glycan level [methylation 2]
GSE243796 Multiomic profiling of medulloblastoma reveals subtype-specific targetable alterations at the proteome and N-glycan level

Data table header descriptions
ID_REF
VALUE beta values were extracted using getBeta()
F60_detection_pvalue

Data table
ID_REF VALUE F60_detection_pvalue
cg18478105 0.015983185 0
cg09835024 0.231428836 3.05E-46
cg14361672 0.818134427 0
cg01763666 0.943283964 0
cg12950382 0.745380297 1.10E-47
cg02115394 0.066614871 0
cg25813447 0.047753148 0
cg07779434 0.088643624 0
cg13417420 0.976912472 0
cg12480843 0.093673668 8.24E-118
cg26724186 0.947319252 0
cg24133276 0.031890474 0
cg00617867 0.958683457 0
cg13773083 0.097710935 0
cg17236668 0.964581582 0
cg19607165 0.081328103 0
cg11073926 0.269258904 0
cg08770523 0.04751365 0
cg08795713 0.830300176 3.83E-54
cg24040570 0.055458734 0

Total number of rows: 865859

Table truncated, full table size 24171 Kbytes.




Supplementary file Size Download File type/resource
GSM7795502_207357020068_R06C01_Grn.idat.gz 7.0 Mb (ftp)(http) IDAT
GSM7795502_207357020068_R06C01_Red.idat.gz 7.0 Mb (ftp)(http) IDAT

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