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Sample GSM781646 Query DataSets for GSM781646
Status Public on Jul 18, 2017
Title DGM-00073_Tr
Sample type RNA
 
Source name Trachea
Organism Homo sapiens
Characteristics smoking status: NS
Extracted molecule total RNA
Extraction protocol Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1-2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the GeneChip Scanner 3000 7G.
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
 
Submission date Aug 17, 2011
Last update date Jul 18, 2017
Contact name Yael Strulovici-Barel
E-mail(s) yas2003@med.cornell.edu
Organization name Weill Cornell Medical College
Department Department of Genetic Medicine
Lab Crystal
Street address 1300 York Avenue
City New York
State/province NY
ZIP/Postal code 10021
Country USA
 
Platform ID GPL570
Series (2)
GSE31449 Positional Identity of Branching-associated HOXB2 and B3 Gene Expression is Maintained by Adult Human Airway Epithelial Progenitor Cells
GSE64614 Distal-to-Proximal Re-patterning of Small Airway Epithelium in Smoking-associated Chronic Obstructive Pulmonary Disease

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 585.949 P 0.000169227
AFFX-BioB-M_at 883.922 P 5.16732e-05
AFFX-BioB-3_at 513.53 P 4.42873e-05
AFFX-BioC-5_at 1636.75 P 5.16732e-05
AFFX-BioC-3_at 2208.76 P 5.16732e-05
AFFX-BioDn-5_at 3919.72 P 4.42873e-05
AFFX-BioDn-3_at 7520.66 P 6.02111e-05
AFFX-CreX-5_at 19508.4 P 5.16732e-05
AFFX-CreX-3_at 26097.8 P 4.42873e-05
AFFX-DapX-5_at 37.3387 A 0.0726999
AFFX-DapX-M_at 27.2152 A 0.39692
AFFX-DapX-3_at 13.0494 A 0.783476
AFFX-LysX-5_at 47.8301 A 0.227636
AFFX-LysX-M_at 38.9926 A 0.39692
AFFX-LysX-3_at 26.7972 A 0.262827
AFFX-PheX-5_at 12.0954 A 0.574038
AFFX-PheX-M_at 4.55862 A 0.963431
AFFX-PheX-3_at 31.5129 A 0.5
AFFX-ThrX-5_at 5.48937 A 0.804734
AFFX-ThrX-M_at 28.0265 A 0.262827

Total number of rows: 54675

Table truncated, full table size 1643 Kbytes.




Supplementary file Size Download File type/resource
GSM781646.CEL.gz 8.2 Mb (ftp)(http) CEL
GSM781646.CHP.gz 13.5 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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