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Sample GSM781655 Query DataSets for GSM781655
Status Public on Jul 18, 2017
Title DGM-00551_Tr
Sample type RNA
 
Source name Trachea
Organism Homo sapiens
Characteristics smoking status: NS
Extracted molecule total RNA
Extraction protocol Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1-2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the GeneChip Scanner 3000 7G.
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
 
Submission date Aug 17, 2011
Last update date Jul 18, 2017
Contact name Yael Strulovici-Barel
E-mail(s) yas2003@med.cornell.edu
Organization name Weill Cornell Medical College
Department Department of Genetic Medicine
Lab Crystal
Street address 1300 York Avenue
City New York
State/province NY
ZIP/Postal code 10021
Country USA
 
Platform ID GPL570
Series (2)
GSE31449 Positional Identity of Branching-associated HOXB2 and B3 Gene Expression is Maintained by Adult Human Airway Epithelial Progenitor Cells
GSE64614 Distal-to-Proximal Re-patterning of Small Airway Epithelium in Smoking-associated Chronic Obstructive Pulmonary Disease

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 495.139 P 0.000296708
AFFX-BioB-M_at 873.027 P 6.02111e-05
AFFX-BioB-3_at 494.878 P 4.42873e-05
AFFX-BioC-5_at 1714.97 P 4.42873e-05
AFFX-BioC-3_at 2076.5 P 4.42873e-05
AFFX-BioDn-5_at 3536.32 P 4.42873e-05
AFFX-BioDn-3_at 6171.74 P 4.42873e-05
AFFX-CreX-5_at 20113.3 P 4.42873e-05
AFFX-CreX-3_at 26490 P 4.42873e-05
AFFX-DapX-5_at 3.92552 A 0.794268
AFFX-DapX-M_at 42.9689 A 0.262809
AFFX-DapX-3_at 3.89592 A 0.988616
AFFX-LysX-5_at 4.56764 A 0.897835
AFFX-LysX-M_at 4.10794 A 0.969024
AFFX-LysX-3_at 24.9176 A 0.0726999
AFFX-PheX-5_at 14.0648 A 0.699394
AFFX-PheX-M_at 3.00463 A 0.973889
AFFX-PheX-3_at 23.2382 A 0.60308
AFFX-ThrX-5_at 3.04363 A 0.966323
AFFX-ThrX-M_at 12.5732 A 0.834139

Total number of rows: 54675

Table truncated, full table size 1646 Kbytes.




Supplementary file Size Download File type/resource
GSM781655.CEL.gz 8.0 Mb (ftp)(http) CEL
GSM781655.CHP.gz 13.2 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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