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Sample GSM7846700 Query DataSets for GSM7846700
Status Public on Feb 28, 2024
Title Autochthonous_AKPVT_tumor_replicate1 [AKPVT3.d9629]
Sample type SRA
 
Source name Colon cancer
Organism Mus musculus
Characteristics cell type: Colon cancer
mice with_tumors: AKPVT
genotype: AKP
Extracted molecule total RNA
Extraction protocol Ambion PureLink RNA Mini Kit
NEBNext Ultra II Directional RNA preparation with poly(A) selection
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
 
Description Autochthonous_AKPVT_1
Data processing Paired-end RNA-seq data were mapped to the UCSC mm10 mouse genome build using Salmon
Assembly: mm10
Supplementary files format and content: ngoto_230707Yil_intCt.txt.gz is a tab delimited text of count data
 
Submission date Oct 18, 2023
Last update date Feb 28, 2024
Contact name Norihiro Goto
E-mail(s) ngoto@mit.edu
Organization name Massachusetts Institute of Technology
Department Department of Biology
Lab Yilmaz lab
Street address 500 Main Street, Building 76
City Cambridge
State/province MA
ZIP/Postal code 02139-4307
Country USA
 
Platform ID GPL19057
Series (2)
GSE222713 SOX17 initiates an immune evasion program in early colorectal cancers.
GSE245668 SOX17 initiates an immune evasion program in early colorectal cancers [RNAseq_230707Yil]
Relations
BioSample SAMN37872389
SRA SRX22124582

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA

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