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Sample GSM7846704 Query DataSets for GSM7846704
Status Public on Feb 28, 2024
Title Autochthonous_AKPVT_tumor_replicate5 [AKPVT5.d9633]
Sample type SRA
Source name Colon cancer
Organism Mus musculus
Characteristics cell type: Colon cancer
mice with_tumors: AKPVT
genotype: AKP
Extracted molecule total RNA
Extraction protocol Ambion PureLink RNA Mini Kit
NEBNext Ultra II Directional RNA preparation with poly(A) selection
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
Description Autochthonous_AKPVT_5
Data processing Paired-end RNA-seq data were mapped to the UCSC mm10 mouse genome build using Salmon
Assembly: mm10
Supplementary files format and content: ngoto_230707Yil_intCt.txt.gz is a tab delimited text of count data
Submission date Oct 18, 2023
Last update date Feb 28, 2024
Contact name Norihiro Goto
Organization name Massachusetts Institute of Technology
Department Department of Biology
Lab Yilmaz lab
Street address 500 Main Street, Building 76
City Cambridge
State/province MA
ZIP/Postal code 02139-4307
Country USA
Platform ID GPL19057
Series (2)
GSE222713 SOX17 initiates an immune evasion program in early colorectal cancers.
GSE245668 SOX17 initiates an immune evasion program in early colorectal cancers [RNAseq_230707Yil]
BioSample SAMN37872385
SRA SRX22124586

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA

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