|
| Status |
Public on Feb 28, 2024 |
| Title |
Autochthonous_AKPVT_tumor_replicate6 [AKPVT5.d9634] |
| Sample type |
SRA |
| |
|
| Source name |
Colon cancer
|
| Organism |
Mus musculus |
| Characteristics |
cell type: Colon cancer
mice with_tumors: AKPVT
genotype: AKP
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Ambion PureLink RNA Mini Kit
NEBNext Ultra II Directional RNA preparation with poly(A) selection
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Description |
Autochthonous_AKPVT_6
|
| Data processing |
Paired-end RNA-seq data were mapped to the UCSC mm10 mouse genome build using Salmon
Assembly: mm10
Supplementary files format and content: ngoto_230707Yil_intCt.txt.gz is a tab delimited text of count data
|
| |
|
| Submission date |
Oct 18, 2023 |
| Last update date |
Feb 28, 2024 |
| Contact name |
Norihiro Goto |
| E-mail(s) |
ngoto@mit.edu
|
| Organization name |
Massachusetts Institute of Technology
|
| Department |
Department of Biology
|
| Lab |
Yilmaz lab
|
| Street address |
500 Main Street, Building 76
|
| City |
Cambridge |
| State/province |
MA |
| ZIP/Postal code |
02139-4307 |
| Country |
USA |
| |
|
| Platform ID |
GPL19057 |
| Series (2) |
| GSE222713 |
SOX17 initiates an immune evasion program in early colorectal cancers. |
| GSE245668 |
SOX17 initiates an immune evasion program in early colorectal cancers [RNAseq_230707Yil] |
|
| Relations |
| BioSample |
SAMN37872384 |
| SRA |
SRX22124587 |
