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Sample GSM7857544 Query DataSets for GSM7857544
Status Public on Oct 26, 2023
Title BLA_FearRecall_fr11_B9_S1185
Sample type SRA
 
Source name Brain_Basolateral_Amygdala
Organism Mus musculus
Characteristics tissue: Brain_Basolateral_Amygdala
genotype: TRAP2 Ai14
treatment: Fear recall
Treatment protocol Fear conditioning paradigm
Extracted molecule polyA RNA
Extraction protocol OligodT primers were used to enrich mRNA
Brain tissues were dissociated with Worthington Papain Digestion Kit RNA libraries were prepared using smart seq 3
Novaseq 6000 was used for sequencing with standard Illumina protocols
 
Library strategy RNA-Seq
Library source transcriptomic single cell
Library selection cDNA
Instrument model Illumina NovaSeq 6000
 
Description Smartseq
Data processing Fastq reads were mapped with STAR(2.7.9a)
Assembly: mm10
Supplementary files format and content: Cell by gene matrix format
 
Submission date Oct 24, 2023
Last update date Oct 26, 2023
Contact name Wenfei Sun
E-mail(s) Wenfei-sun@stanford.edu
Organization name Stanford University
Street address 318 Campus Dr.
City Stanford
ZIP/Postal code 94305
Country USA
 
Platform ID GPL24247
Series (1)
GSE246147 Single cell RNAseq of brian cells in the basolateral amygdala with fear conditioning
Relations
BioSample SAMN37972514
SRA SRX22208636

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA

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