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Sample GSM7857545 Query DataSets for GSM7857545
Status Public on Oct 26, 2023
Title BLA_FearRecall_fr11_C10_S1210
Sample type SRA
Source name Brain_Basolateral_Amygdala
Organism Mus musculus
Characteristics tissue: Brain_Basolateral_Amygdala
genotype: TRAP2 Ai14
treatment: Fear recall
Treatment protocol Fear conditioning paradigm
Extracted molecule polyA RNA
Extraction protocol OligodT primers were used to enrich mRNA
Brain tissues were dissociated with Worthington Papain Digestion Kit RNA libraries were prepared using smart seq 3
Novaseq 6000 was used for sequencing with standard Illumina protocols
Library strategy RNA-Seq
Library source transcriptomic single cell
Library selection cDNA
Instrument model Illumina NovaSeq 6000
Description Smartseq
Data processing Fastq reads were mapped with STAR(2.7.9a)
Assembly: mm10
Supplementary files format and content: Cell by gene matrix format
Submission date Oct 24, 2023
Last update date Oct 26, 2023
Contact name Wenfei Sun
Organization name Stanford University
Street address 318 Campus Dr.
City Stanford
ZIP/Postal code 94305
Country USA
Platform ID GPL24247
Series (1)
GSE246147 Single cell RNAseq of brian cells in the basolateral amygdala with fear conditioning
BioSample SAMN37972513
SRA SRX22208637

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA

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