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Sample GSM785921 Query DataSets for GSM785921
Status Public on Dec 05, 2011
Title HFD3a
Sample type RNA
 
Source name Liver, high fat diet (HFD)
Organism Mus musculus
Characteristics gender: female
tissue: liver
strain: C57BL/6J
Treatment protocol For NMN treatment, NMN was intraperitoneally given to HFD-mice for seven days.
Growth protocol Mice were maintained on a regular chow or high fat diet.
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from frozen liver samples with QIAGEN RNeasy kit in accordance with the prescribed protocol provided with the kit.
Label biotin
Label protocol Biotinylated cRNA were prepared for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Chip-A
Data processing The average of redundant genes were calculated in raw microarray results and data were subjected to Z score transformation, and Z ratio were calculated. False discovery rates for the differences in expression levels between two conditions (RC vs HFDa or HFDb vs NMN) were calculated using the Rank Product Analysis. All data were analyzed by the R statistical software package.
 
Submission date Aug 25, 2011
Last update date Sep 15, 2023
Contact name Jun Yoshino
E-mail(s) jyoshino@med.shimane-u.ac.jp
Organization name Faculty of Medicine, Shimane University
Street address 89-1 Enya-cho
City Izumo
State/province Shimane
ZIP/Postal code 693-8501
Country Japan
 
Platform ID GPL6885
Series (1)
GSE31647 Nicotinamide mononucleotide, a key NAD+ precursor, treats the pathophysiology of diet- and age-induced diabetes

Data table header descriptions
ID_REF
VALUE Z scores

Data table
ID_REF VALUE
ILMN_1212607 -0.512823422
ILMN_1212612 0.228135456
ILMN_1212619 -0.625337421
ILMN_1212628 -0.614100504
ILMN_1212632 -0.278937559
ILMN_1212636 1.886369204
ILMN_1212637 1.24602853
ILMN_1212645 3.090448546
ILMN_1212648 0.216439704
ILMN_1212653 -0.362908585
ILMN_1212672 0.185465745
ILMN_1212682 -0.540540001
ILMN_1212683 -0.656734182
ILMN_1212685 -0.558564206
ILMN_1212692 -0.48690913
ILMN_1212693 0.116094313
ILMN_1212695 -0.505871015
ILMN_1212698 -0.595182801
ILMN_1212702 4.894439967
ILMN_1212703 1.932790951

Total number of rows: 18118

Table truncated, full table size 452 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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