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Sample GSM78609 Query DataSets for GSM78609
Status Public on Nov 17, 2005
Title NA18503 (Cy3) versus NA10851 (Cy5)
Sample type genomic
 
Channel 1
Source name B-lymphocyte cell line, normal/untreated growth
Organism Homo sapiens
Characteristics hapmap sample id: NA18503, Gender: Male, Cell type: B-lymphocytes, Tissue: Blood, Panel: Yoruban
coriell cell line repository identifier: GM18503
http: //locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM18503
Biomaterial provider Coriell Cell Repositories
Coriell
Extracted molecule genomic DNA
Label Cy3
Label protocol See Seltzer et al (2005) Genes, Chromosomes & Cancer 44:305-319
 
Channel 2
Source name B-lymphocyte cell line, normal/untreated growth
Organism Homo sapiens
Characteristics HapMap sample id: NA10851, Gender: Male, Cell type: B-lymphocytes, Tissue: Blood, Panel: CEPH
Coriell cell line repository identifier: GM10851
http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM10851
Biomaterial provider Coriell Cell Repositories
Coriell
Extracted molecule genomic DNA
Label Cy5
Label protocol See Seltzer et al (2005) Genes, Chromosomes & Cancer 44:305-319
 
 
Hybridization protocol See Seltzer et al (2005) Genes, Chromosomes & Cancer 44:305-319
Scan protocol See Seltzer et al (2005) Genes, Chromosomes & Cancer 44:305-319
Description B-lymphocytes derived from blood
Data processing Non-normalised signal intensity values derived from NimbleScan v2 software.
 
Submission date Oct 19, 2005
Last update date Jan 15, 2013
Contact name Dan Andrews
E-mail(s) dta@sanger.ac.uk
Organization name Sanger Institute
Street address Wellcome Trust Genome Campus
City Hinxton
ZIP/Postal code CB10 1SA
Country United Kingdom
 
Platform ID GPL2988
Series (1)
GSE3474 HapMap Yoruban individuals vs CEPH reference

Data table header descriptions
ID_REF Feature/probe identifier
EXP_47537_532
REF_47537_635
RATIO Ratio of non-normalised intensity values
EXP_NORM Normalised 'experiment' (non-normalised) intensity value (Ch1)
REF_NORM Normalised reference intensity value (Ch2)
VALUE Normalised log2 ratio

Data table
ID_REF EXP_47537_532 REF_47537_635 RATIO EXP_NORM REF_NORM VALUE
CHR0100P010047579_1 10.468 10.706 -0.238 10.579 10.590 -0.011
CHR0100P010047587_1 10.790 11.128 -0.338 10.915 10.982 -0.067
CHR0100P010047595_1 11.071 11.304 -0.233 11.208 11.153 0.055
CHR0100P010047603_1 11.259 11.420 -0.161 11.403 11.262 0.141
CHR0100P010047613_1 10.927 11.393 -0.466 11.058 11.237 -0.178
CHR0100P010047621_1 10.486 11.127 -0.641 10.598 10.981 -0.383
CHR0100P010047629_1 11.236 11.250 -0.014 11.380 11.101 0.279
CHR0100P010047637_1 10.690 11.168 -0.478 10.814 11.022 -0.208
CHR0100P010047645_1 10.395 10.913 -0.517 10.500 10.778 -0.278
CHR0100P010047653_1 10.646 10.899 -0.253 10.767 10.765 0.002
CHR0100P010047661_1 10.999 11.363 -0.363 11.133 11.208 -0.075
CHR0100P010047669_1 12.193 12.412 -0.219 12.362 12.223 0.139
CHR0100P010047677_1 10.085 10.856 -0.771 10.159 10.727 -0.568
CHR0100P010047685_1 10.070 10.427 -0.356 10.143 10.334 -0.191
CHR0100P010047693_1 10.512 11.130 -0.618 10.626 10.984 -0.358
CHR0100P010048096_1 11.148 11.693 -0.545 11.288 11.522 -0.234
CHR0100P010048104_1 11.086 11.473 -0.387 11.223 11.313 -0.090
CHR0100P010048112_1 11.032 11.723 -0.691 11.168 11.550 -0.383
CHR0100P010048120_1 11.492 11.804 -0.312 11.649 11.628 0.021
CHR0100P010048128_1 11.372 11.782 -0.411 11.522 11.606 -0.084

Total number of rows: 293851

Table truncated, full table size 17166 Kbytes.




Supplementary data files not provided

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