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Sample GSM78612 Query DataSets for GSM78612
Status Public on Nov 17, 2005
Title NA18521 (Cy3) versus NA10851 (Cy5)
Sample type genomic
 
Channel 1
Source name B-lymphocyte cell line, normal/untreated growth
Organism Homo sapiens
Characteristics hapmap sample id: NA18521, Gender: Male, Cell type: B-lymphocytes, Tissue: Blood, Panel: Yoruban
coriell cell line repository identifier: GM18521
http: //locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM18521
Biomaterial provider Coriell Cell Repositories
Coriell
Extracted molecule genomic DNA
Label Cy3
Label protocol See Seltzer et al (2005) Genes, Chromosomes & Cancer 44:305-319
 
Channel 2
Source name B-lymphocyte cell line, normal/untreated growth
Organism Homo sapiens
Characteristics HapMap sample id: NA10851, Gender: Male, Cell type: B-lymphocytes, Tissue: Blood, Panel: CEPH
Coriell cell line repository identifier: GM10851
http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM10851
Biomaterial provider Coriell Cell Repositories
Coriell
Extracted molecule genomic DNA
Label Cy5
Label protocol See Seltzer et al (2005) Genes, Chromosomes & Cancer 44:305-319
 
 
Hybridization protocol See Seltzer et al (2005) Genes, Chromosomes & Cancer 44:305-319
Scan protocol See Seltzer et al (2005) Genes, Chromosomes & Cancer 44:305-319
Description B-lymphocytes derived from blood
Data processing Non-normalised signal intensity values derived from NimbleScan v2 software.
 
Submission date Oct 19, 2005
Last update date Jan 15, 2013
Contact name Dan Andrews
E-mail(s) dta@sanger.ac.uk
Organization name Sanger Institute
Street address Wellcome Trust Genome Campus
City Hinxton
ZIP/Postal code CB10 1SA
Country United Kingdom
 
Platform ID GPL2988
Series (1)
GSE3474 HapMap Yoruban individuals vs CEPH reference

Data table header descriptions
ID_REF Feature/probe identifier
EXP_47537_532
REF_47537_635
RATIO Ratio of non-normalised intensity values
EXP_NORM Normalised 'experiment' (non-normalised) intensity value (Ch1)
REF_NORM Normalised reference intensity value (Ch2)
VALUE Normalised log2 ratio

Data table
ID_REF EXP_47537_532 REF_47537_635 RATIO EXP_NORM REF_NORM VALUE
CHR0100P010047579_1 11.285 11.485 -0.200 11.346 11.400 -0.055
CHR0100P010047587_1 11.566 11.573 -0.008 11.646 11.478 0.169
CHR0100P010047595_1 11.507 11.960 -0.453 11.583 11.839 -0.257
CHR0100P010047603_1 11.973 12.072 -0.099 12.078 11.942 0.136
CHR0100P010047613_1 11.386 11.543 -0.157 11.453 11.452 0.001
CHR0100P010047621_1 11.051 11.242 -0.191 11.096 11.176 -0.079
CHR0100P010047629_1 11.032 11.112 -0.080 11.077 11.057 0.020
CHR0100P010047637_1 11.629 11.737 -0.107 11.712 11.627 0.086
CHR0100P010047645_1 11.260 11.215 0.046 11.319 11.152 0.167
CHR0100P010047653_1 10.415 10.764 -0.349 10.421 10.734 -0.313
CHR0100P010047661_1 11.441 11.837 -0.396 11.512 11.722 -0.210
CHR0100P010047669_1 12.061 12.328 -0.267 12.170 12.186 -0.017
CHR0100P010047677_1 11.349 11.531 -0.182 11.415 11.442 -0.027
CHR0100P010047685_1 10.882 11.277 -0.395 10.917 11.208 -0.291
CHR0100P010047693_1 11.328 11.559 -0.231 11.392 11.466 -0.073
CHR0100P010048096_1 11.668 11.788 -0.120 11.755 11.675 0.080
CHR0100P010048104_1 11.376 11.431 -0.055 11.443 11.349 0.094
CHR0100P010048112_1 11.554 11.802 -0.247 11.634 11.689 -0.055
CHR0100P010048120_1 11.820 12.075 -0.254 11.917 11.945 -0.028
CHR0100P010048128_1 12.318 12.313 0.005 12.439 12.172 0.267

Total number of rows: 293851

Table truncated, full table size 17244 Kbytes.




Supplementary data files not provided

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