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Sample GSM78615 Query DataSets for GSM78615
Status Public on Nov 17, 2005
Title NA18860 (Cy3) versus NA10851 (Cy5)
Sample type genomic
 
Channel 1
Source name B-lymphocyte cell line, normal/untreated growth
Organism Homo sapiens
Characteristics hapmap sample id: NA18860, Gender: Male, Cell type: B-lymphocytes, Tissue: Blood, Panel: Yoruban
coriell cell line repository identifier: GM18860
http: //locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM18860
Biomaterial provider Coriell Cell Repositories
Coriell
Extracted molecule genomic DNA
Label Cy3
Label protocol See Seltzer et al (2005) Genes, Chromosomes & Cancer 44:305-319
 
Channel 2
Source name B-lymphocyte cell line, normal/untreated growth
Organism Homo sapiens
Characteristics HapMap sample id: NA10851, Gender: Male, Cell type: B-lymphocytes, Tissue: Blood, Panel: CEPH
Coriell cell line repository identifier: GM10851
http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM10851
Biomaterial provider Coriell Cell Repositories
Coriell
Extracted molecule genomic DNA
Label Cy5
Label protocol See Seltzer et al (2005) Genes, Chromosomes & Cancer 44:305-319
 
 
Hybridization protocol See Seltzer et al (2005) Genes, Chromosomes & Cancer 44:305-319
Scan protocol See Seltzer et al (2005) Genes, Chromosomes & Cancer 44:305-319
Description B-lymphocytes derived from blood
Data processing Non-normalised signal intensity values derived from NimbleScan v2 software.
 
Submission date Oct 19, 2005
Last update date Jan 15, 2013
Contact name Dan Andrews
E-mail(s) dta@sanger.ac.uk
Organization name Sanger Institute
Street address Wellcome Trust Genome Campus
City Hinxton
ZIP/Postal code CB10 1SA
Country United Kingdom
 
Platform ID GPL2988
Series (1)
GSE3474 HapMap Yoruban individuals vs CEPH reference

Data table header descriptions
ID_REF Feature/probe identifier
EXP_47537_532
REF_47537_635
RATIO Ratio of non-normalised intensity values
EXP_NORM Normalised 'experiment' (non-normalised) intensity value (Ch1)
REF_NORM Normalised reference intensity value (Ch2)
VALUE Normalised log2 ratio

Data table
ID_REF EXP_47537_532 REF_47537_635 RATIO EXP_NORM REF_NORM VALUE
CHR0100P010047579_1 10.662 10.751 -0.089 10.697 10.704 -0.007
CHR0100P010047587_1 10.410 10.933 -0.523 10.431 10.874 -0.443
CHR0100P010047595_1 10.777 11.116 -0.338 10.818 11.050 -0.232
CHR0100P010047603_1 11.028 11.199 -0.172 11.077 11.130 -0.053
CHR0100P010047613_1 10.924 11.578 -0.655 10.970 11.501 -0.531
CHR0100P010047621_1 10.576 11.045 -0.469 10.606 10.982 -0.376
CHR0100P010047629_1 10.354 10.719 -0.365 10.372 10.673 -0.301
CHR0100P010047637_1 9.910 10.297 -0.387 9.897 10.279 -0.383
CHR0100P010047645_1 9.949 10.334 -0.384 9.938 10.314 -0.376
CHR0100P010047653_1 10.451 10.843 -0.393 10.474 10.791 -0.317
CHR0100P010047661_1 10.410 10.568 -0.158 10.431 10.532 -0.101
CHR0100P010047669_1 10.353 10.470 -0.117 10.370 10.440 -0.070
CHR0100P010047677_1 9.770 9.846 -0.076 9.745 9.863 -0.118
CHR0100P010047685_1 9.469 9.771 -0.302 9.418 9.793 -0.376
CHR0100P010047693_1 10.604 10.821 -0.217 10.636 10.770 -0.135
CHR0100P010048096_1 10.939 11.008 -0.070 10.986 10.946 0.040
CHR0100P010048104_1 10.896 10.899 -0.002 10.942 10.843 0.099
CHR0100P010048112_1 11.509 11.731 -0.222 11.555 11.657 -0.102
CHR0100P010048120_1 10.986 11.408 -0.422 11.035 11.332 -0.297
CHR0100P010048128_1 11.003 11.476 -0.473 11.052 11.402 -0.350

Total number of rows: 293851

Table truncated, full table size 16954 Kbytes.




Supplementary data files not provided

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