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Sample GSM788665 Query DataSets for GSM788665
Status Public on Sep 12, 2011
Title AC_11_CGH
Sample type genomic
 
Channel 1
Source name Microdissected lung tumor
Organism Homo sapiens
Characteristics tissue: Lung tumor
subtype: Adenocarcinoma
Growth protocol microdissected lung tumor tissue
Extracted molecule genomic DNA
Extraction protocol Phenol/Chloroform DNA extraction. For the reference DNA, DNA from blood from an anonymous male reference was used.
Label Cy3
Label protocol Cy3 sample, Cy5 normal male reference
 
Channel 2
Source name Normal male (blood DNA)
Organism Homo sapiens
Characteristics reference: Normal male (blood DNA)
Growth protocol microdissected lung tumor tissue
Extracted molecule genomic DNA
Extraction protocol Phenol/Chloroform DNA extraction. For the reference DNA, DNA from blood from an anonymous male reference was used.
Label Cy5
Label protocol Cy3 sample, Cy5 normal male reference
 
 
Hybridization protocol Please see Lockwood et al 2007 (PMID: 18391978) and Watson et al 2007 (PMID: 17051368)
Scan protocol Please see Lockwood et al 2007 (PMID: 18391978) and Watson et al 2007 (PMID: 17051368)
Description AC_11
Data processing Normalized using algorithm by Khojasteh et al (PMID: 16297240)
 
Submission date Aug 31, 2011
Last update date Sep 12, 2011
Contact name Raj Chari
E-mail(s) rchari@bccrc.ca
Organization name BC Cancer Research Centre
Department Cancer Genetics and Developmental Biology
Lab Wan Lam Lab
Street address 675 West 10th Avenue
City Vancouver
State/province BC
ZIP/Postal code V5Z 1L3
Country Canada
 
Platform ID GPL14360
Series (2)
GSE31798 DNA copy number profiles of NSCLC tumors
GSE31800 DNA copy number and gene expression profiles of resected non-small cell lung cancer tumors

Data table header descriptions
ID_REF
VALUE log2 normalized ratio Cy3/Cy5

Data table
ID_REF VALUE
1 -0.058314
2 -0.056918
3 0.054544
4 0.017493
5 -0.063734
6 0.030571
7 0.175182
8 0.136053
9 -0.094664
10 0.158045
11 0.010136
12 0.085382
13 -0.184041
14 0.412415
15 0.003764
16 -0.154083
17 0.110979
18 0.020792
19 -0.181987
20 0.036688

Total number of rows: 53856

Table truncated, full table size 797 Kbytes.




Supplementary file Size Download File type/resource
GSM788665.txt.gz 1.7 Mb (ftp)(http) TXT
Processed data included within Sample table

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