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Sample GSM79 Query DataSets for GSM79
Status Public on Nov 10, 2001
Title 8B-2WR
Sample type RNA
 
Channel 1
Source name 4 day old shoot
Organism Zea mays
Extracted molecule total RNA
 
Channel 2
Source name 2 week old root
Organism Zea mays
Extracted molecule total RNA
 
 
Description One of duplicate hybridizations.
 
Submission date Jun 13, 2001
Last update date May 27, 2005
Contact name Yangrae Cho
E-mail(s) yacho@sequence.stanford.edu
Phone 650-812-1976
Fax 650-812-1975
Organization name Stanford University
Department Biological Sciences
Lab V. Walbot
Street address 385 Serra Mall
City Stanford University
State/province CA
ZIP/Postal code 94305-8221
Country USA
 
Platform ID GPL12
Series (1)
GSE141 Gene-expression profile comparisons distinguish seven organs of maize

Data table header descriptions
ID_REF
Dia. Feature size
F635 Median Arithmetic median from channel 1
F635 Mean Arithmetic mean calculated as the raw signal divided by the surface area
F635 SD Standard deviation calculated from the mean signal (Channel 1)
B635 Median Arithmetic median of background from channel 1
B635 Mean Arithmetic mean of background (channel 1)
B635 SD Background standard deviation calculated for the mean background signal (channel 1)
F532 Median Arithmetic median from channel 2
F532 Mean Arithmetic mean calculated as the raw signal divided by the surface area (channel 2)
F532 SD Standard deviation calculated from the mean signal (Channel 2)
B532 Median Arithmetic median of background from channel 2
B532 Mean Arithmetic mean of background (channel 2)
B532 SD Background standard deviation calculated for the mean background signal (channel 2)
Rgn Rē Regression root square
F Pixels Area for intensity measurement of a feature
B Pixels Area for background intensity measurement
Flags crude quality:(-)value=bad flagged
VALUE log ratio of PRE_VALUE
PRE_VALUE The calculated ratio between (mean intensity of channel 1-median background)/(mean intensity of ch 2-median background of ch2)

Data table
ID_REF Dia. F635 Median F635 Mean F635 SD B635 Median B635 Mean B635 SD F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD Rgn Rē F Pixels B Pixels Flags VALUE PRE_VALUE
707001A02.x1 140 9428 9825 3381 99 108 41 10824 10732 3909 116 121 29 0.928 156 896 0 -0.0381053 0.916
707002E03.y1 120 10654 11072 3047 94 105 43 6096 5869 1542 113 117 27 0.938 120 606 0 0.2803513 1.907
707002G11.y1 140 1309 1355 874 92 100 34 1318 1226 481 109 113 25 0.789 156 777 0 0.0534633 1.131
707003H06.x3 140 6489 6840 2167 90 98 52 6424 6498 2153 110 113 23 0.925 156 778 0 0.0240753 1.057
707004B03.y1 130 2252 2494 896 89 101 65 1707 1818 548 109 113 25 0.907 120 669 0 0.1482943 1.407
707004G10.x1 130 11850 12491 4010 89 201 961 14939 15440 4614 110 148 545 0.931 120 706 0 -0.0920513 0.809
707001A04.x1 140 4662 4619 1651 88 179 880 10535 10689 3937 108 141 500 0.867 156 838 0 -0.3685563 0.428
707002E04.y1 130 14550 14335 3578 87 96 48 15317 14768 3351 110 114 24 0.938 120 689 0 -0.0123343 0.972
707003C01.x3 140 7687 8073 3111 87 96 46 18156 18187 6641 109 112 25 0.917 156 802 0 -0.3545783 0.442
707003H07.x2 140 2448 2488 894 87 95 34 2424 2601 805 108 111 25 0.891 156 782 0 -0.0163743 0.963
707004H03.x2 140 14776 16310 6089 89 192 1952 12761 12956 3969 111 209 1404 0.922 156 782 0 0.1014033 1.263
707004A11.x2 140 6342 6433 2583 92 293 2966 6577 6427 2359 110 255 1675 0.808 156 764 0 0.0017343 1.004
707001C09.x1 140 2106 2185 973 90 99 34 1527 1594 529 110 116 49 0.902 156 796 0 0.1498353 1.412
707002B05.y1 140 3682 3711 1132 87 95 32 5441 5482 1512 111 115 23 0.872 156 791 0 -0.1706963 0.675
707003C02.x2 140 2152 2320 1012 88 100 83 11516 12272 5251 114 121 73 0.802 156 822 0 -0.7351823 0.184
707003H08.x4 140 2437 2550 960 87 95 35 2832 3152 1320 113 118 30 0.861 156 802 0 -0.0915153 0.810
707004G04.x2 140 6161 5940 1848 85 91 28 6254 6328 2045 111 114 25 0.914 156 750 0 -0.0259493 0.942
707004D11.y1 140 4247 4149 1100 86 94 36 5586 5503 1389 110 115 40 0.902 156 779 0 -0.1232053 0.753
707001E11.x1 140 16899 17460 6240 88 96 37 13517 13694 4803 110 117 57 0.917 156 807 0 0.1068713 1.279
707002F05.y1 140 7152 7134 2226 91 99 40 9518 9203 3130 109 115 31 0.927 156 908 0 -0.1112593 0.774

Total number of rows: 5760

Table truncated, full table size 544 Kbytes.




Supplementary data files not provided

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