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Sample GSM7908408 Query DataSets for GSM7908408
Status Public on Nov 24, 2023
Title Hippocampus WT at P1 3
Sample type SRA
Source name Hippocampus
Organism Mus musculus
Characteristics tissue: Hippocampus
genotype: WT
Growth protocol Mice with one day of life were sacrificed by decapitation and the tissues (testes or hippocampus) were dissecated and freeze immediately in liquid nitrogen for porterior RNA isolation
Extracted molecule total RNA
Extraction protocol RNA was harvasted using the Rneasy mini kit plus (Qiagen)
RNA libraries for RNA-seq were generated using NEBNext Ultra™ RNA Library Prep Kit for Illumina
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
Description GD011
Data processing Sequence reads were trimmed using Trimgalore version 0.6.6 to exclude low-quality bases.
Trimmed sequence reads were mapped to GRCm39/mm39 using STAR version 2.7.8a.
Gene expression levels were determined by measuring the number of reads mapped to each gene region using RSEM version 1.3.3.
Assembly: mm39
Supplementary files format and content: tab-delimited text file raw counts for each Sample
Submission date Nov 19, 2023
Last update date Nov 24, 2023
Contact name Kazuya Tokumura
Organization name Gifu Pharmaceutical University
Department Bioactive Molecules
Lab Pharmacology
Street address 1-25-4 Daigakunishi
City Gifu
ZIP/Postal code 501-1196
Country Japan
Platform ID GPL17021
Series (1)
GSE248211 Osteocalcin of maternal and embryonic origins synergize to establish homeostasis in offspring
BioSample SAMN38322410
SRA SRX22575856

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA

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